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Reference - PMID:34010645 - The histone H3K9M mutation synergizes with H3K14 ubiquitylation to selectively sequester histone H3K9 methyltransferase Clr4 at heterochromatin.

Reference summary

PubMed ID
PMID:34010645
Title
The histone H3K9M mutation synergizes with H3K14 ubiquitylation to selectively sequester histone H3K9 methyltransferase Clr4 at heterochromatin.
Authors
Shan CM, Kim JK, Wang J, Bao K, Sun Y, Chen H, Yue JX, Stirpe A, Zhang Z, Lu C, Schalch T, Liti G, Nagy PL, Tong L, Qiao F, Jia S
Citation
Cell Rep 2021 May 18;35(7):109137
Publication year
2021
Abstract
Oncogenic histone lysine-to-methionine mutations block the methylation of their corresponding lysine residues on wild-type histones. One attractive model is that these mutations sequester histone methyltransferases, but genome-wide studies show that mutant histones and histone methyltransferases often do not colocalize. Using chromatin immunoprecipitation sequencing (ChIP-seq), here, we show that, in fission yeast, even though H3K9M-containing nucleosomes are broadly distributed across the genome, the histone H3K9 methyltransferase Clr4 is mainly sequestered at pericentric repeats. This selective sequestration of Clr4 depends not only on H3K9M but also on H3K14 ubiquitylation (H3K14ub), a modification deposited by a Clr4-associated E3 ubiquitin ligase complex. In vitro, H3K14ub synergizes with H3K9M to interact with Clr4 and potentiates the inhibitory effects of H3K9M on Clr4 enzymatic activity. Moreover, binding kinetics show that H3K14ub overcomes the Clr4 aversion to H3K9M and reduces its dissociation. The selective sequestration model reconciles previous discrepancies and demonstrates the importance of protein-interaction kinetics in regulating biological processes.

Annotation

GO molecular function

GO:0061649 - ubiquitin-modified histone reader activity

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Multi-locus phenotype

FYPO:0007597 - abolished CLRC complex binding

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FYPO:0005850 - abolished protein localization to heterochromatin at centromere outer repeat

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

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Single locus phenotype

FYPO:0005850 - abolished protein localization to heterochromatin at centromere outer repeat

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

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FYPO:0001645 - decreased protein-protein interaction

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FYPO:0000220 - increased centromeric outer repeat transcript level

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FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

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FYPO:0002567 - normal centromeric outer repeat transcript level

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FYPO:0006992 - normal chromatin silencing at centromere otr1R

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FYPO:0003234 - normal histone H3-K9 methylation at heterochromatin domain during vegetative growth

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FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

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