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Reference - PMID:34228709 - Expression of the cancer-associated DNA polymerase ε P286R in fission yeast leads to translesion synthesis polymerase dependent hypermutation and defective DNA replication.

Reference summary

PubMed ID
PMID:34228709
Title
Expression of the cancer-associated DNA polymerase ε P286R in fission yeast leads to translesion synthesis polymerase dependent hypermutation and defective DNA replication.
Authors
Soriano I, Vazquez E, De Leon N, Bertrand S, Heitzer E, Toumazou S, Bo Z, Palles C, Pai CC, Humphrey TC, Tomlinson I, Cotterill S, Kearsey SE
Citation
PLoS Genet 2021 Jul;17(7):e1009526
Publication year
2021
Abstract
Somatic and germline mutations in the proofreading domain of the replicative DNA polymerase ε (POLE-exonuclease domain mutations, POLE-EDMs) are frequently found in colorectal and endometrial cancers and, occasionally, in other tumours. POLE-associated cancers typically display hypermutation, and a unique mutational signature, with a predominance of C > A transversions in the context TCT and C > T transitions in the context TCG. To understand better the contribution of hypermutagenesis to tumour development, we have modelled the most recurrent POLE-EDM (POLE-P286R) in Schizosaccharomyces pombe. Whole-genome sequencing analysis revealed that the corresponding pol2-P287R allele also has a strong mutator effect in vivo, with a high frequency of base substitutions and relatively few indel mutations. The mutations are equally distributed across different genomic regions, but in the immediate vicinity there is an asymmetry in AT frequency. The most abundant base-pair changes are TCT > TAT transversions and, in contrast to human mutations, TCG > TTG transitions are not elevated, likely due to the absence of cytosine methylation in fission yeast. The pol2-P287R variant has an increased sensitivity to elevated dNTP levels and DNA damaging agents, and shows reduced viability on depletion of the Pfh1 helicase. In addition, S phase is aberrant and RPA foci are elevated, suggestive of ssDNA or DNA damage, and the pol2-P287R mutation is synthetically lethal with rad3 inactivation, indicative of checkpoint activation. Significantly, deletion of genes encoding some translesion synthesis polymerases, most notably Pol κ, partially suppresses pol2-P287R hypermutation, indicating that polymerase switching contributes to this phenotype.

Annotation

Multi-locus phenotype

FYPO:0003165 - cut with abnormal chromosome segregation

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FYPO:0001355 - decreased vegetative cell population growth

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FYPO:0005752 - increased cellular dNTP level

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FYPO:0000256 - mutator

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FYPO:0000957 - normal growth on methyl methanesulfonate

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FYPO:0001357 - normal vegetative cell population growth

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FYPO:0001098 - sensitive to 4-nitroquinoline N-oxide

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Single locus phenotype

FYPO:0000173 - abnormal mitotic cell cycle DNA replication checkpoint

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FYPO:0003923 - decreased rate of mitotic DNA replication elongation

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FYPO:0001355 - decreased vegetative cell population growth

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FYPO:0005752 - increased cellular dNTP level

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FYPO:0000614 - increased duration of mitotic S phase

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FYPO:0001707 - increased mitotic DNA damage checkpoint activation

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FYPO:0002573 - increased number of Ssb1 foci

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FYPO:0000256 - mutator

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FYPO:0005753 - normal cellular dNTP level

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FYPO:0001133 - normal DNA replication

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FYPO:0000969 - normal growth during cellular response to UV

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FYPO:0001689 - normal growth on 4-nitroquinoline N-oxide

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FYPO:0003906 - normal growth on bleomycin

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FYPO:0000957 - normal growth on methyl methanesulfonate

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FYPO:0004474 - normal mitotic cell cycle DNA replication checkpoint

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FYPO:0005032 - normal mutation rate

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FYPO:0007711 - normal number of Ssb1 foci

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FYPO:0003530 - normal S-phase DNA damage checkpoint

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FYPO:0002578 - resistance to hydroxyurea

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FYPO:0001098 - sensitive to 4-nitroquinoline N-oxide

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FYPO:0000095 - sensitive to bleomycin

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FYPO:0000089 - sensitive to methyl methanesulfonate

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FYPO:0000268 - sensitive to UV during vegetative growth

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