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Reference - PMID:34798057 - Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation.

Reference summary

PubMed ID
PMID:34798057
Title
Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation.
Authors
Finet O, Yague-Sanz C, Krüger LK, Tran P, Migeot V, Louski M, Nevers A, Rougemaille M, Sun J, Ernst FGM, Wacheul L, Wery M, Morillon A, Dedon P, Lafontaine DLJ, Hermand D
Citation
Mol Cell 2022 Jan 20;82(2):404-419.e9
Publication year
2022
Abstract
The epitranscriptome has emerged as a new fundamental layer of control of gene expression. Nevertheless, the determination of the transcriptome-wide occupancy and function of RNA modifications remains challenging. Here we have developed Rho-seq, an integrated pipeline detecting a range of modifications through differential modification-dependent rhodamine labeling. Using Rho-seq, we confirm that the reduction of uridine to dihydrouridine (D) by the Dus reductase enzymes targets tRNAs in E. coli and fission yeast. We find that the D modification is also present on fission yeast mRNAs, particularly those encoding cytoskeleton-related proteins, which is supported by large-scale proteome analyses and ribosome profiling. We show that the α-tubulin encoding mRNA nda2 undergoes Dus3-dependent dihydrouridylation, which affects its translation. The absence of the modification on nda2 mRNA strongly impacts meiotic chromosome segregation, resulting in low gamete viability. Applying Rho-seq to human cells revealed that tubulin mRNA dihydrouridylation is evolutionarily conserved.

Annotation

GO molecular function

GO:0106414 - mRNA dihydrouridine synthase activity

Genes:

GO:0102262 - tRNA-dihydrouridine16 synthase activity

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GO:0102263 - tRNA-dihydrouridine17 synthase activity

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GO:0102264 - tRNA-dihydrouridine20 synthase activity

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GO:0102266 - tRNA-dihydrouridine20a synthase activity

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GO:0102267 - tRNA-dihydrouridine20b synthase activity

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Multi-locus phenotype

FYPO:0000082 - decreased cell population growth at high temperature

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Genotypes:

FYPO:0002141 - normal cell population growth at low temperature

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Genotypes:

FYPO:0000091 - sensitive to thiabendazole

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Single locus phenotype

FYPO:0000051 - abnormal meiosis

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Genotypes:

FYPO:0000708 - decreased mating efficiency

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Genotypes:

FYPO:0005599 - increased duration of meiosis I

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FYPO:0000836 - increased protein level

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Genotypes:

FYPO:0005413 - increased protein level during meiosis I

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Genotypes:

FYPO:0001327 - increased protein level during vegetative growth

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Genotypes:

FYPO:0000309 - inviable spore with abnormal morphology

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FYPO:0002091 - lagging meiotic chromosomes

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Genotypes:

FYPO:0001147 - normal mating efficiency

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Genotypes:

FYPO:0000091 - sensitive to thiabendazole

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Genotypes: