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Reference - PMID:34967420 - Genetic screen for suppression of transcriptional interference reveals fission yeast 14-3-3 protein Rad24 as an antagonist of precocious Pol2 transcription termination.

Reference summary

PubMed ID
PMID:34967420
Title
Genetic screen for suppression of transcriptional interference reveals fission yeast 14-3-3 protein Rad24 as an antagonist of precocious Pol2 transcription termination.
Authors
Garg A, Shuman S, Schwer B
Citation
Nucleic Acids Res 2022 Jan 25;50(2):803-819
Publication year
2022
Abstract
Expression of fission yeast Pho1 acid phosphatase is repressed under phosphate-replete conditions by transcription of an upstream prt lncRNA that interferes with the pho1 mRNA promoter. lncRNA control of pho1 mRNA synthesis is influenced by inositol pyrophosphate (IPP) kinase Asp1, deletion of which results in pho1 hyper-repression. A forward genetic screen for ADS (Asp1 Deletion Suppressor) mutations identified the 14-3-3 protein Rad24 as a governor of phosphate homeostasis. Production of full-length interfering prt lncRNA was squelched in rad24Δ cells, concomitant with increased production of pho1 mRNA and increased Pho1 activity, while shorter precociously terminated non-interfering prt transcripts persisted. Epistasis analysis showed that pho1 de-repression by rad24Δ depends on: (i) 3'-processing and transcription termination factors CPF, Pin1, and Rhn1; and (ii) Threonine-4 of the Pol2 CTD. Combining rad24Δ with the IPP pyrophosphatase-dead asp1-H397A allele caused a severe synthetic growth defect that was ameliorated by loss-of-function mutations in CPF, Pin1, and Rhn1, and by CTD phospho-site mutations T4A and Y1F. Rad24 function in repressing pho1 was effaced by mutation of its phosphate-binding pocket. Our findings instate a new role for a 14-3-3 protein as an antagonist of precocious RNA 3'-processing/termination.

Annotation

Multi-locus phenotype

FYPO:0002244 - abolished acid phosphatase activity

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FYPO:0001045 - decreased acid phosphatase activity

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FYPO:0000082 - decreased cell population growth at high temperature

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FYPO:0000080 - decreased cell population growth at low temperature

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FYPO:0002243 - increased acid phosphatase activity

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FYPO:0002061 - inviable vegetative cell population

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FYPO:0003267 - normal acid phosphatase activity

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FYPO:0000047 - normal cell population growth

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FYPO:0001357 - normal vegetative cell population growth

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FYPO:0001234 - slow vegetative cell population growth

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Single locus phenotype

FYPO:0002244 - abolished acid phosphatase activity

Genes:

Genotypes:

FYPO:0001045 - decreased acid phosphatase activity

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Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

Genes:

Genotypes:

FYPO:0002243 - increased acid phosphatase activity

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FYPO:0006614 - increased termination of RNA polymerase II transcription

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FYPO:0000780 - increased transcription during vegetative growth

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FYPO:0003267 - normal acid phosphatase activity

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Genotypes:

FYPO:0001234 - slow vegetative cell population growth

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