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Reference - PMID:35157728 - TOR complex 2 contributes to regulation of gene expression via inhibiting Gcn5 recruitment to subtelomeric and DNA replication stress genes.

Reference summary

PubMed ID
PMID:35157728
Title
TOR complex 2 contributes to regulation of gene expression via inhibiting Gcn5 recruitment to subtelomeric and DNA replication stress genes.
Authors
Cohen A, Pataki E, Kupiec M, Weisman R
Citation
PLoS Genet 2022 Feb;18(2):e1010061
Publication year
2022
Abstract
The fission yeast TOR complex 2 (TORC2) is required for gene silencing at subtelomeric regions and for the induction of gene transcription in response to DNA replication stress. Thus, TORC2 affects transcription regulation both negatively and positively. Whether these two TORC2-dependent functions share a common molecular mechanism is currently unknown. Here, we show that Gad8 physically interacts with proteins that regulate transcription, including subunits of the Spt-Ada-Gcn5-acetyltransferase (SAGA) complex and the BET bromodomain protein Bdf2. We demonstrate that in the absence of TORC2, Gcn5, the histone acetyltransferase subunit of SAGA, accumulates at subtelomeric genes and at non-induced promoters of DNA replication genes. Remarkably, the loss of Gcn5 in TORC2 mutant cells restores gene silencing as well as transcriptional induction in response to DNA replication stress. Loss of Bdf2 alleviates excess of Gcn5 binding in TORC2 mutant cells and also rescues the aberrant regulation of transcription in these cells. Furthermore, the loss of either SAGA or Bdf2 suppresses the sensitivity of TORC2 mutant cells to a variety of stresses, including DNA replication, DNA damage, temperature and nutrient stresses. We suggest a role of TORC2 in transcriptional regulation that is critical for gene silencing and gene induction in response to stress and involves the binding of Gcn5 to the chromatin.

Annotation

GO biological process

GO:0000122 - negative regulation of transcription by RNA polymerase II

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GO molecular function

GO:1990841 - promoter-specific chromatin binding

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Multi-locus phenotype

FYPO:0000708 - decreased mating efficiency

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Genotypes:

FYPO:0003086 - normal chromatin binding

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FYPO:0003555 - normal chromatin silencing at subtelomere

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FYPO:0006395 - normal histone H3-K9 acetylation at subtelomeric heterochromatin during vegetative growth

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FYPO:0003223 - normal histone H3-K9 acetylation during vegetative growth

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FYPO:0003576 - normal protein localization to subtelomeric heterochromatin

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FYPO:0006742 - normal transcription from MCB promoter

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FYPO:0000088 - sensitive to hydroxyurea

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Single locus phenotype

FYPO:0004575 - increased histone H3-K9 acetylation at subtelomere during vegetative growth

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FYPO:0005316 - increased histone H4-K12 acetylation at subtelomere during vegetative growth

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FYPO:0006740 - increased protein localization to chromatin at MCB promoters during vegetative growth

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Genotypes:

FYPO:0003010 - increased protein localization to subtelomeric heterochromatin during vegetative growth

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Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

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Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

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Genotypes: