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Reference - PMID:36002457 - Structural analysis of Red1 as a conserved scaffold of the RNA-targeting MTREC/PAXT complex.

Reference summary

PubMed ID
PMID:36002457
Title
Structural analysis of Red1 as a conserved scaffold of the RNA-targeting MTREC/PAXT complex.
Authors
Foucher AE, Touat-Todeschini L, Juarez-Martinez AB, Rakitch A, Laroussi H, Karczewski C, Acajjaoui S, Soler-López M, Cusack S, Mackereth CD, Verdel A, Kadlec J
Citation
Nat Commun 2022 Aug 24;13(1):4969
Publication year
2022
Abstract
To eliminate specific or aberrant transcripts, eukaryotes use nuclear RNA-targeting complexes that deliver them to the exosome for degradation. S. pombe MTREC, and its human counterpart PAXT, are key players in this mechanism but inner workings of these complexes are not understood in sufficient detail. Here, we present an NMR structure of an MTREC scaffold protein Red1 helix-turn-helix domain bound to the Iss10 N-terminus and show this interaction is required for proper cellular growth and meiotic mRNA degradation. We also report a crystal structure of a Red1-Ars2 complex explaining mutually exclusive interactions of hARS2 with various ED/EGEI/L motif-possessing RNA regulators, including hZFC3H1 of PAXT, hFLASH or hNCBP3. Finally, we show that both Red1 and hZFC3H1 homo-dimerize via their coiled-coil regions indicating that MTREC and PAXT likely function as dimers. Our results, combining structures of three Red1 interfaces with in vivo studies, provide mechanistic insights into conserved features of MTREC/PAXT architecture.

Annotation

GO biological process

GO:0033621 - nuclear mRNA surveillance of meiosis-specific transcripts

Genes:

GO:0071034 - CUT catabolic process

Genes:

GO:0033621 - nuclear mRNA surveillance of meiosis-specific transcripts

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GO molecular function

GO:0030674 - protein-macromolecule adaptor activity

Genes:

Single locus phenotype

FYPO:0000705 - abolished protein-protein interaction

Genes:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

Genes:

Genotypes:

FYPO:0007280 - decreased protein localization to nuclear exosome focus

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0002960 - increased level of DSR-containing meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0002964 - increased protein localization to nuclear exosome focus

Genes:

Genotypes:

FYPO:0008152 - normal CUT RNA level

Genes:

Genotypes:

FYPO:0003747 - normal level of DSR-containing meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

Genes:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

Genes:

Genotypes: