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Reference - PMID:36423630 - Chromatin localization of nucleophosmin organizes ribosome biogenesis.

Reference summary

PubMed ID
PMID:36423630
Title
Chromatin localization of nucleophosmin organizes ribosome biogenesis.
Authors
Ugolini I, Bilokapic S, Ferrolino M, Teague J, Yan Y, Zhou X, Deshmukh A, White M, Kriwacki RW, Halic M
Citation
Mol Cell 2022 Dec 01;82(23):4443-4457.e9
Publication year
2022
Abstract
Ribosome biogenesis takes place in the nucleolus, a nuclear membrane-less organelle. Although well studied, it remains unknown how nascent ribosomal subunits separate from the central chromatin compartment and move to the outer granular component, where maturation occurs. We find that the Schizosaccharomyces pombe nucleophosmin-like protein Fkbp39 localizes to rDNA sites encoding the 60S subunit rRNA, and this localization contributes to its specific association with nascent 60S subunits. Fkbp39 dissociates from chromatin to bind nascent 60S subunits, causing the latter to partition away from chromatin and from nascent 40S subunits through liquid-liquid phase separation. In vivo, Fkbp39 binding directs the translocation of nascent 60S subunits toward the nucleophosmin-rich granular component. This process increases the efficiency of 60S subunit assembly, facilitating the incorporation of 60S RNA domain III. Thus, chromatin localization determines the specificity of nucleophosmin in sorting nascent ribosomal subunits and coordinates their movement into specialized assembly compartments within the nucleolus.

Annotation

GO biological process

GO:1902626 - assembly of large subunit precursor of preribosome

Genes:

GO:0042273 - ribosomal large subunit biogenesis

Genes:

GO:0042274 - ribosomal small subunit biogenesis

Genes:

GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I

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GO cellular component

GO:0000785 - chromatin

Genes:

GO:0030874 - nucleolar chromatin

Genes:

GO:0030684 - preribosome

Genes:

GO:0032040 - small-subunit processome

Genes:

GO:0000785 - chromatin

Genes:

GO molecular function

GO:0140693 - molecular condensate scaffold activity

Genes:

GO:0031491 - nucleosome binding

Genes:

GO:0000182 - rDNA binding

Genes:

GO:0003723 - RNA binding

Genes:

Single locus phenotype

FYPO:0001679 - abnormal protein localization to chromatin

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Genotypes:

FYPO:0005017 - abnormal ribosome biogenesis

Genes:

Genotypes:

FYPO:0003694 - decreased mature 18S rRNA level

Genes:

Genotypes:

FYPO:0001137 - decreased mature 25S rRNA level

Genes:

Genotypes:

FYPO:0004227 - decreased nucleosome binding

Genes:

Genotypes:

FYPO:0002391 - decreased protein localization to chromatin at rDNA

Genes:

Genotypes:

FYPO:0004008 - normal rRNA transcription

Genes:

Genotypes:

Subunit composition

PBO:0015212 - homomeric(2)

Genes:

PBO:0015247 - homomeric(5)

Genes: