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Reference - PMID:37913773 - TOR inactivation triggers heterochromatin formation in rDNA during glucose starvation.

Reference summary

PubMed ID
PMID:37913773
Title
TOR inactivation triggers heterochromatin formation in rDNA during glucose starvation.
Authors
Hirai H, Sen Y, Tamura M, Ohta K
Citation
Cell Rep 2023 Nov 28;42(11):113320
Publication year
2023
Abstract
In response to environmental cues, such as nutrient starvation, living organisms modulate gene expression through mechanisms involving histone modifications. Specifically, nutrient depletion inactivates the TOR (target of rapamycin) pathway, leading to reduced expression of ribosomal genes. While these regulatory mechanisms are well elucidated in budding yeast Saccharomyces cerevisiae, their conservation across diverse organisms remains unclear. In this study, we demonstrate that fission yeast Schizosaccharomyces pombe cells repress ribosomal gene transcription through a different mechanism. TORC1, which accumulates in the rDNA region, dissociates upon starvation, resulting in enhanced methylation of H3K9 and heterochromatin formation, facilitated by dissociation of the stress-responsive transcription factor Atf1 and accumulation of the histone chaperone FACT. We propose that this mechanism might be adapted in mammals that possess Suv39H1 and HP1, which are absent in budding yeast.

Annotation

GO biological process

GO:0061188 - negative regulation of rDNA heterochromatin formation

Genes:

GO:0060963 - positive regulation of ribosomal protein gene transcription by RNA polymerase II

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GO cellular component

GO:0030874 - nucleolar chromatin

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GO molecular function

GO:0042134 - rRNA primary transcript binding

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Multi-locus phenotype

FYPO:0002391 - decreased protein localization to chromatin at rDNA

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Genotypes:

FYPO:0001134 - normal mature 18S rRNA level

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Single locus phenotype

FYPO:0003694 - decreased mature 18S rRNA level

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FYPO:0001324 - decreased protein level during vegetative growth

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Genotypes:

FYPO:0002391 - decreased protein localization to chromatin at rDNA

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FYPO:0001117 - decreased RNA level during vegetative growth

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FYPO:0006074 - increased histone H3-K9 dimethylation at rDNA during vegetative growth

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FYPO:0004032 - increased protein localization to chromatin at rDNA

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Genotypes:

FYPO:0003033 - increased RNA level during glucose starvation

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Genotypes:

FYPO:0001134 - normal mature 18S rRNA level

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FYPO:0002625 - normal protein localization to chromatin rDNA

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