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Reference - PMID:37939137 - The ortholog of human REEP1-4 is required for autophagosomal enclosure of ER-phagy/nucleophagy cargos in fission yeast.

Reference summary

PubMed ID
PMID:37939137
Title
The ortholog of human REEP1-4 is required for autophagosomal enclosure of ER-phagy/nucleophagy cargos in fission yeast.
Authors
Zou CX, Ma ZH, Jiang ZD, Pan ZQ, Xu DD, Suo F, Shao GC, Dong MQ, Du LL
Citation
PLoS Biol 2023 Nov;21(11):e3002372
Publication year
2023
Abstract
Selective macroautophagy of the endoplasmic reticulum (ER) and the nucleus, known as ER-phagy and nucleophagy, respectively, are processes whose mechanisms remain inadequately understood. Through an imaging-based screen, we find that in the fission yeast Schizosaccharomyces pombe, Yep1 (also known as Hva22 or Rop1), the ortholog of human REEP1-4, is essential for ER-phagy and nucleophagy but not for bulk autophagy. In the absence of Yep1, the initial phase of ER-phagy and nucleophagy proceeds normally, with the ER-phagy/nucleophagy receptor Epr1 coassembling with Atg8. However, ER-phagy/nucleophagy cargos fail to reach the vacuole. Instead, nucleus- and cortical-ER-derived membrane structures not enclosed within autophagosomes accumulate in the cytoplasm. Intriguingly, the outer membranes of nucleus-derived structures remain continuous with the nuclear envelope-ER network, suggesting a possible outer membrane fission defect during cargo separation from source compartments. We find that the ER-phagy role of Yep1 relies on its abilities to self-interact and shape membranes and requires its C-terminal amphipathic helices. Moreover, we show that human REEP1-4 and budding yeast Atg40 can functionally substitute for Yep1 in ER-phagy, and Atg40 is a divergent ortholog of Yep1 and REEP1-4. Our findings uncover an unexpected mechanism governing the autophagosomal enclosure of ER-phagy/nucleophagy cargos and shed new light on the functions and evolution of REEP family proteins.

Annotation

Complementation

PBO:0119270 - functionally complemented by human REEP1

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PBO:0119271 - functionally complemented by human REEP2

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PBO:0119272 - functionally complemented by human REEP3

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PBO:0119273 - functionally complemented by human REEP4

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PBO:0119274 - functionally complemented by S. cerevisiae YOR152C

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GO biological process

GO:1990809 - endoplasmic reticulum tubular network membrane organization

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GO:0061736 - engulfment of target by autophagosome

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GO:0044804 - nucleophagy

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GO:0061709 - reticulophagy

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GO cellular component

GO:0032541 - cortical endoplasmic reticulum

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GO:0005829 - cytosol

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GO:0005783 - endoplasmic reticulum

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GO:0031965 - nuclear membrane

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GO:0005654 - nucleoplasm

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GO:0097038 - perinuclear endoplasmic reticulum

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GO molecular function

GO:0180020 - membrane bending activity

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Multi-locus phenotype

FYPO:0000164 - abnormal cell separation after cytokinesis

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FYPO:0006433 - abnormal tubular endoplasmic reticulum morphology

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Single locus phenotype

FYPO:0008388 - abnormal autophagosomal enclosure during nucleophagy

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FYPO:0000164 - abnormal cell separation after cytokinesis

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FYPO:0008083 - abnormal reticulophagy

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FYPO:0008385 - abolished nucleophagy during cellular response to Endoplasmic Reticulum stress

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FYPO:0008086 - abolished nucleophagy during nitrogen starvation

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FYPO:0000705 - abolished protein-protein interaction

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FYPO:0007447 - abolished reticulophagy during cellular response to endoplasmic reticulum stress

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FYPO:0008084 - abolished reticulophagy during nitrogen starvation

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FYPO:0008386 - decreased nucleophagy

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FYPO:0007446 - decreased reticulophagy during cellular response to endoplasmic reticulum stress

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FYPO:0007444 - normal macroautophagy during cellular response to endoplasmic reticulum stress

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FYPO:0006294 - normal macroautophagy during nitrogen starvation

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FYPO:0008387 - normal protein localization to autophagic structure

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Orthologs