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Reference - PMID:38272226 - E3 ubiquitin ligase Hul6 modulates iron-dependent metabolism by regulating Php4 stability.

Reference summary

PubMed ID
PMID:38272226
Title
E3 ubiquitin ligase Hul6 modulates iron-dependent metabolism by regulating Php4 stability.
Authors
Yao R, Li R, Wu X, Jin T, Luo Y, Li R, Huang Y
Citation
J Biol Chem 2024 Jan 23;:105670
Publication year
2024
Abstract
Schizosaccharomyces pombe Php4 is the regulatory subunit of the CCAAT-binding complexes and plays an important role in the regulation of iron homeostasis and iron-dependent metabolism. Here we show that Php4 undergoes ubiquitin-dependent degradation in the late logarithmic and stationary phases. The degradation and ubiquitination of Php4 could be attenuated by deletion of hul6, a gene encoding a putative HECT-type E3 ubiquitin ligase. The expression levels of Hul6 and Php4 are oppositely regulated during cell growth. Hul6 interacts with the C-terminal region of Php4. Two lysine residues (K217 and K274) located in the C-terminal region of Php4 are required for its polyubiquitination. Increasing the levels of Php4 by deletion of hul6 or overexpression of php4 decreased expression of Php4 target proteins involved in iron-dependent metabolic pathways such as the tricarboxylic cycle (TCA cycle) and mitochondrial oxidative phosphorylation (OXPHOS), thus causing increased sensitivity to high-iron and reductions in succinate dehydrogenase (SDH) and mitochondrial complex II activities. Hul6 is located primarily in the mitochondrial outer membrane and most likely targets cytosolic Php4 for ubiquitination and degradation. Taken together, our data suggest that Hul6 regulates iron-dependent metabolism through degradation of Php4 under normal growth conditions. Our results also suggest that Hul6 promotes iron-dependent metabolism to help the cell to adapt to a nutrient-starved growth phase.

Annotation

GO cellular component

GO:0032473 - cytoplasmic side of mitochondrial outer membrane

Genes:

GO:0005741 - mitochondrial outer membrane

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GO molecular function

GO:0061630 - ubiquitin protein ligase activity

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Modification

MOD:01148 - ubiquitinylated lysine

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Multi-locus phenotype

FYPO:0001327 - increased protein level during vegetative growth

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Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

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Genotypes:

FYPO:0001409 - normal growth on glycerol carbon source

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Genotypes:

FYPO:0007121 - normal growth on iron

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FYPO:0002015 - sensitive to iron ion starvation

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Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

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PomGeneEx:0000018 - protein level increased

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Single locus phenotype

FYPO:0000705 - abolished protein-protein interaction

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Genotypes:

FYPO:0000684 - decreased cell population growth on glycerol carbon source

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Genotypes:

FYPO:0000519 - decreased oxidative phosphorylation

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Genotypes:

FYPO:0001324 - decreased protein level during vegetative growth

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FYPO:0002768 - decreased protein ubiquitination during vegetative growth

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FYPO:0001645 - decreased protein-protein interaction

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Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

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Genotypes:

FYPO:0001327 - increased protein level during vegetative growth

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FYPO:0003914 - increased protein level in stationary phase

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FYPO:0001130 - increased protein localization to nucleus during vegetative growth

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Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

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Genotypes:

FYPO:0000245 - loss of viability in stationary phase

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Genotypes:

FYPO:0001814 - normal cell population growth during iron starvation

Genes:

Genotypes:

FYPO:0001409 - normal growth on glycerol carbon source

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Genotypes:

FYPO:0007121 - normal growth on iron

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Genotypes:

FYPO:0007952 - normal protein level during stationary phase

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Genotypes:

FYPO:0005825 - sensitive to iron

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Genotypes:

FYPO:0002015 - sensitive to iron ion starvation

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Genotypes: