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Reference - PMID:38285941 - Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance.

Reference summary

PubMed ID
PMID:38285941
Title
Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance.
Authors
Nathanailidou P, Dhakshnamoorthy J, Xiao H, Zofall M, Holla S, O'Neill M, Andresson T, Wheeler D, Grewal SIS
Citation
Proc Natl Acad Sci U S A 2024 Feb 06;121(6):e2315596121
Publication year
2024
Abstract
Heterochromatin, defined by histone H3 lysine 9 methylation (H3K9me), spreads across large domains and can be epigenetically inherited in a self-propagating manner. Heterochromatin propagation depends upon a read-write mechanism, where the Clr4/Suv39h methyltransferase binds to preexisting trimethylated H3K9 (H3K9me3) and further deposits H3K9me. How the parental methylated histone template is preserved during DNA replication is not well understood. Here, we demonstrate using Schizosaccharomyces pombe that heterochromatic regions are specialized replication domains demarcated by their surrounding boundary elements. DNA replication throughout these domains is distinguished by an abundance of replisome components and is coordinated by Swi6/HP1. Although mutations in the replicative helicase subunit Mcm2 that affect histone binding impede the maintenance of a heterochromatin domain at an artificially targeted ectopic site, they have only a modest impact on heterochromatin propagation via the read-write mechanism at an endogenous site. Instead, our findings suggest a crucial role for the replication factor Mcl1 in retaining parental histones and promoting heterochromatin propagation via a mechanism involving the histone chaperone FACT. Engagement of FACT with heterochromatin requires boundary elements, which position the heterochromatic domain at the nuclear peripheral subdomain enriched for heterochromatin factors. Our findings highlight the importance of replisome components and boundary elements in creating a specialized environment for the retention of parental methylated histones, which facilitates epigenetic inheritance of heterochromatin.

Annotation

GO biological process

GO:0006335 - DNA replication-dependent chromatin assembly

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GO cellular component

GO:0000792 - heterochromatin

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GO molecular function

GO:0000510 - H3-H4 histone complex chaperone activity

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Multi-locus phenotype

FYPO:0003044 - abnormal heterochromatin assembly

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FYPO:0007376 - abolished epigenetic heterochromatin inheritance

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Single locus phenotype

FYPO:0000156 - abnormal chromatin silencing at silent mating-type cassette

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FYPO:0000217 - abnormal DNA replication

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FYPO:0007160 - abnormal DNA replication-dependent nucleosome assembly

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FYPO:0003044 - abnormal heterochromatin assembly

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FYPO:0004746 - abolished heterochromatin assembly involved in chromatin silencing at centromere outer repeat

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FYPO:0003247 - abolished histone H3 binding

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FYPO:0008187 - abolished histone H4 binding

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FYPO:0000705 - abolished protein-protein interaction

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FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0007158 - decreased histone H3 binding

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FYPO:0007159 - decreased histone H4 binding

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FYPO:0003246 - normal mitotic S phase progression

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FYPO:0001357 - normal vegetative cell population growth

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FYPO:0000088 - sensitive to hydroxyurea

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FYPO:0001234 - slow vegetative cell population growth

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