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Reference - PMID:38479839 - Coordination of histone chaperones for parental histone segregation and epigenetic inheritance.

Reference summary

PubMed ID
PMID:38479839
Title
Coordination of histone chaperones for parental histone segregation and epigenetic inheritance.
Authors
Fang Y, Hua X, Shan CM, Toda T, Qiao F, Zhang Z, Jia S
Citation
Genes Dev 2024 Mar 13;
Publication year
2024
Abstract
Chromatin-based epigenetic memory relies on the accurate distribution of parental histone H3-H4 tetramers to newly replicated DNA strands. Mcm2, a subunit of the replicative helicase, and Dpb3/4, subunits of DNA polymerase ε, govern parental histone H3-H4 deposition to the lagging and leading strands, respectively. However, their contribution to epigenetic inheritance remains controversial. Here, using fission yeast heterochromatin inheritance systems that eliminate interference from initiation pathways, we show that a Mcm2 histone binding mutation severely disrupts heterochromatin inheritance, while mutations in Dpb3/4 cause only moderate defects. Surprisingly, simultaneous mutations of Mcm2 and Dpb3/4 stabilize heterochromatin inheritance. eSPAN (enrichment and sequencing of protein-associated nascent DNA) analyses confirmed the conservation of Mcm2 and Dpb3/4 functions in parental histone H3-H4 segregation, with their combined absence showing a more symmetric distribution of parental histone H3-H4 than either single mutation alone. Furthermore, the FACT histone chaperone regulates parental histone transfer to both strands and collaborates with Mcm2 and Dpb3/4 to maintain parental histone H3-H4 density and faithful heterochromatin inheritance. These results underscore the importance of both symmetric distribution of parental histones and their density at daughter strands for epigenetic inheritance and unveil distinctive properties of parental histone chaperones during DNA replication.

Annotation

GO biological process

GO:0006335 - DNA replication-dependent chromatin assembly

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GO molecular function

GO:0031491 - nucleosome binding

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Multi-locus phenotype

FYPO:0003217 - decreased chromatin silencing at centromere central core

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0007478 - decreased epigenetic heterochromatin inheritance

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FYPO:0008185 - decreased histone H3-K9 trimethylation at centromere central core during vegetative growth

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FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

Genes:

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FYPO:0004742 - normal chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0008186 - normal histone H3-K9 trimethylation at centromere central core during vegetative growth

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Single locus phenotype

FYPO:0008188 - abolished histone H3-K9 trimethylation at centromere central core during vegetative growth

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FYPO:0002834 - decreased chromatin silencing at centromere

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Genotypes:

FYPO:0003217 - decreased chromatin silencing at centromere central core

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0007478 - decreased epigenetic heterochromatin inheritance

Genes:

Genotypes:

FYPO:0008185 - decreased histone H3-K9 trimethylation at centromere central core during vegetative growth

Genes:

Genotypes:

FYPO:0000890 - decreased histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

Genes:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0008186 - normal histone H3-K9 trimethylation at centromere central core during vegetative growth

Genes:

Genotypes:

FYPO:0008199 - normal histone H3-K9 trimethylation at centromere outer repeat during vegetative growth

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Genotypes: