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Reference - PMID:38482739 - Critical importance of DNA binding for CSL protein functions in fission yeast.

Reference summary

PubMed ID
PMID:38482739
Title
Critical importance of DNA binding for CSL protein functions in fission yeast.
Authors
Marešová A, Oravcová M, Rodríguez-López M, Hradilová M, Zemlianski V, Häsler R, Hernández P, Bähler J, Převorovský M
Citation
J Cell Sci 2024 Mar 14;
Publication year
2024
Abstract
CSL (CBF1/RBP-Jκ/Suppressor of Hairless/LAG-1) proteins are conserved transcription factors found in animals and fungi. In fission yeast, they regulate various cellular processes, including cell cycle progression, lipid metabolism, and cell adhesion. CSL proteins bind to DNA through their N-terminal Rel-like domain and central beta-trefoil domain. Here, we investigated the importance of DNA binding for CSL functions in the fission yeast Schizosaccharomyces pombe. We created CSL mutants with disrupted DNA binding and found that the vast majority of CSL functions depend on intact DNA binding. Specifically, DNA binding is crucial for the regulation of cell adhesion, lipid metabolism, cell cycle progression, long non-coding RNA expression, and genome integrity maintenance. Interestingly, perturbed lipid metabolism leads to chromatin structure changes, potentially linking lipid metabolism to the diverse CSL-associated phenotypes. Our study highlights the critical role of DNA binding for CSL protein functions in fission yeast.

Annotation

GO biological process

GO:0045944 - positive regulation of transcription by RNA polymerase II

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GO molecular function

GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific

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Multi-locus phenotype

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

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FYPO:0002578 - resistance to hydroxyurea

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Genotypes:

FYPO:0000085 - sensitive to camptothecin

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Genotypes:

FYPO:0000091 - sensitive to thiabendazole

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Single locus phenotype

FYPO:0002737 - abnormal mitotic cell cycle process

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FYPO:0000006 - abnormal mitotic DNA damage checkpoint

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FYPO:0001118 - abnormal vegetative cell morphology

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FYPO:0000010 - abolished cell-substrate adhesion

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FYPO:0000229 - cut

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FYPO:0003165 - cut with abnormal chromosome segregation

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FYPO:0004880 - decreased level of lipid metabolism gene mRNA during vegetative growth

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FYPO:0006470 - decreased mature rRNA level

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FYPO:0007505 - decreased protein localization to chromatin at promoter

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FYPO:0008249 - decreased protein localization to chromatin at protein coding gene

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FYPO:0006494 - decreased rDNA copy number during vegetative growth

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Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

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Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0001403 - increased cell-substrate adhesion

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Genotypes:

FYPO:0005995 - increased lncRNA level

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FYPO:0000972 - increased number of Rad52 foci during vegetative growth

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FYPO:0004032 - increased protein localization to chromatin at rDNA

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Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

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FYPO:0002552 - lipid droplets present in decreased numbers

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FYPO:0001690 - normal growth on camptothecin

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Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

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Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes:

FYPO:0002578 - resistance to hydroxyurea

Genes:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

Genes:

Genotypes: