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Reference - PMID:39110593 - VAP-mediated membrane-tethering mechanisms implicate ER-PM contact function in pH homeostasis.

Reference summary

PubMed ID
PMID:39110593
Title
VAP-mediated membrane-tethering mechanisms implicate ER-PM contact function in pH homeostasis.
Authors
Hoh KL, Mu B, See T, Ng AYE, Ng AQE, Zhang D
Citation
Cell Rep 2024 Aug 05;43(8):114592
Publication year
2024
Abstract
Vesicle-associated membrane protein (VAMP)-associated proteins (VAPs) are highly conserved endoplasmic reticulum (ER)-resident proteins that establish ER contacts with multiple membrane compartments in many eukaryotes. However, VAP-mediated membrane-tethering mechanisms remain ambiguous. Here, focusing on fission yeast ER-plasma membrane (PM) contact formation, using systematic interactome analyses and quantitative microscopy, we predict a non-VAP-protein direct binding-based ER-PM coupling. We further reveal that VAP-anionic phospholipid interactions may underlie ER-PM association and define the pH-responsive nature of VAP-tethered membrane contacts. Such conserved interactions with anionic phospholipids are generally defective in amyotrophic lateral sclerosis-associated human VAPB mutant. Moreover, we identify a conserved FFAT-like motif locating at the autoinhibitory hotspot of the essential PM proton pump Pma1. This modulatory VAP-Pma1 interaction appears crucial for pH homeostasis. We thus propose an ingenious strategy for maintaining intracellular pH by coupling Pma1 modulation with pH-sensory ER-PM contacts via VAP-mediated interactions.

Annotation

GO biological process

GO:0120010 - intermembrane phospholipid transfer

Genes:

GO cellular component

GO:0032541 - cortical endoplasmic reticulum

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GO:0005635 - nuclear envelope

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GO molecular function

GO:0160214 - endoplasmic reticulum-plasma membrane adaptor activity

Genes:

GO:0035091 - phosphatidylinositol binding

Genes:

GO:0001786 - phosphatidylserine binding

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Multi-locus phenotype

FYPO:0002128 - abolished protein localization to plasma membrane, with protein mislocalized to cytoplasm, during vegetative growth

Genes:

Genotypes:

FYPO:0006330 - decreased endoplasmic reticulum-plasma membrane tethering

Genes:

Genotypes:

FYPO:0006628 - decreased phosphatidylinositol-4-phosphate level in plasma membrane

Genes:

Genotypes:

FYPO:0004085 - decreased vegetative cell growth

Genes:

Genotypes:

FYPO:0008330 - increased phosphatidylinositol-4-phosphate level in plasma membrane

Genes:

Genotypes:

FYPO:0006629 - normal phosphatidylinositol-4-phosphate level in plasma membrane

Genes:

Genotypes:

FYPO:0008294 - normal plasma membrane-ER tethering

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Genotypes:

FYPO:0002674 - normal protein localization to plasma membrane

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Genotypes:

Protein sequence feature

SO:0001527 - peptide_localization_signal

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Single locus phenotype

FYPO:0006330 - decreased endoplasmic reticulum-plasma membrane tethering

Genes:

Genotypes:

FYPO:0008328 - decreased phosphatidylinositol binding

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Genotypes:

FYPO:0006628 - decreased phosphatidylinositol-4-phosphate level in plasma membrane

Genes:

Genotypes:

FYPO:0008077 - decreased phosphatidylserine binding

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Genotypes:

FYPO:0001645 - decreased protein-protein interaction

Genes:

Genotypes:

FYPO:0004085 - decreased vegetative cell growth

Genes:

Genotypes:

FYPO:0008330 - increased phosphatidylinositol-4-phosphate level in plasma membrane

Genes:

Genotypes:

FYPO:0002151 - inviable spore

Genes:

Genotypes:

FYPO:0008294 - normal plasma membrane-ER tethering

Genes:

Genotypes:

FYPO:0008329 - phosphatidylserine absent from plasma membrane

Genes:

Genotypes: