PomBase home

Reference - PMID:39333464 - Uridylation regulates mRNA decay directionality in fission yeast.

Reference summary

PubMed ID
PMID:39333464
Title
Uridylation regulates mRNA decay directionality in fission yeast.
Authors
Grochowski M, Lipińska-Zubrycka L, Townsend S, Golisz-Mocydlarz A, Zakrzewska-Płaczek M, Brzyżek G, Jurković B, Świeżewski S, Ralser M, Małecki M
Citation
Nat Commun 2024 Sep 27;15(1):8359
Publication year
2024
Abstract
Cytoplasmic mRNA decay is effected by exonucleolytic degradation in either the 5' to 3' or 3' to 5' direction. Pervasive terminal uridylation is implicated in mRNA degradation, however, its functional relevance for bulk mRNA turnover remains poorly understood. In this study, we employ genome-wide 3'-RACE (gw3'-RACE) in the model system fission yeast to elucidate the role of uridylation in mRNA turnover. We observe widespread uridylation of shortened poly(A) tails, promoting efficient 5' to 3' mRNA decay and ensuring timely and controlled mRNA degradation. Inhibition of this uridylation process leads to excessive deadenylation and enhanced 3' to 5' mRNA decay accompanied by oligouridylation. Strikingly we found that uridylation of poly(A) tails and oligouridylation of non-polyadenylated substrates are catalysed by different terminal uridyltransferases Cid1 and Cid16 respectively. Our study sheds new light on the intricate regulatory mechanisms underlying bulk mRNA turnover, demonstrating the role of uridylation in modulating mRNA decay pathways.

Annotation

GO biological process

GO:0000957 - mitochondrial RNA catabolic process

Genes:

GO:0060212 - negative regulation of nuclear-transcribed mRNA poly(A) tail shortening

Genes:

GO:0036450 - polyuridylation-dependent decapping of nuclear-transcribed mRNA

Genes:

GO:1990074 - polyuridylation-dependent mRNA catabolic process

Genes:

GO molecular function

GO:0050265 - RNA uridylyltransferase activity

Genes:

Multi-locus phenotype

FYPO:0008339 - abolished 3' end uridylation of non-polyadenylated RNA

Genes:

Genotypes:

FYPO:0008336 - abolished mRNA poly(A) tail uridylation

Genes:

Genotypes:

FYPO:0008332 - decreased mRNA poly(A) tail uridylation

Genes:

Genotypes:

FYPO:0002930 - decreased poly(A) tail length

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0008338 - increased 3' end uridylation of non-polyadenylated RNA

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes:

Single locus phenotype

FYPO:0008337 - decreased 3' end uridylation of non-polyadenylated RNA

Genes:

Genotypes:

FYPO:0008332 - decreased mRNA poly(A) tail uridylation

Genes:

Genotypes:

FYPO:0002930 - decreased poly(A) tail length

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0008335 - increased mRNA poly(A) tail uridylation

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes: