PomBase home

Reference - PMID:39786922 - The fission yeast SUMO-targeted ubiquitin ligase Slx8 functionally associates with clustered centromeres and the silent mating-type region at the nuclear periphery.

Reference summary

PubMed ID
PMID:39786922
Title
The fission yeast SUMO-targeted ubiquitin ligase Slx8 functionally associates with clustered centromeres and the silent mating-type region at the nuclear periphery.
Authors
Chakraborty S, Strachan J, Schirmeisen K, Besse L, Mercier E, Fréon K, Zhang H, Zhao N, Bayne EH, Lambert SAE
Citation
Biol Open 2024 Dec 15;13(12)
Publication year
2024
Abstract
The SUMO-targeted ubiquitin ligase (STUbL) family is involved in multiple cellular processes via a wide range of mechanisms to maintain genome stability. One of the evolutionarily conserved functions of STUbL is to promote changes in the nuclear positioning of DNA lesions, targeting them to the nuclear periphery. In Schizossacharomyces pombe, the STUbL Slx8 is a regulator of SUMOylated proteins and promotes replication stress tolerance by counteracting the toxicity of SUMO conjugates. In order to study the dynamic dialectic between ubiquitinylation and SUMOylation in the nuclear space of the S. pombe genome, we analyzed Slx8 localization. Unexpectedly, we did not detect replication stress-induced Slx8 foci. However, we discovered that Slx8 forms a single nuclear focus, enriched at the nuclear periphery, which marks both clustered centromeres at the spindle pole body and the silent mating-type region. The formation of this single Slx8 focus requires the E3 SUMO ligase Pli1, poly-SUMOylation and the histone methyl transferase Clr4 that is responsible for the heterochromatin histone mark H3-K9 methylation. Finally, we established that Slx8 promotes centromere clustering and gene silencing at heterochromatin domains. Altogether, our data highlight evolutionarily conserved and functional relationships between STUbL and heterochromatin domains to promote gene silencing and nuclear organization.

Annotation

GO biological process

GO:0072766 - centromere clustering at the mitotic interphase nuclear envelope

Genes:

GO cellular component

GO:0000775 - chromosome, centromeric region

Genes:

GO:0031934 - mating-type region heterochromatin

Genes:

GO:0044732 - mitotic spindle pole body

Genes:

GO:0034399 - nuclear periphery

Genes:

GO:0000781 - chromosome, telomeric region

Genes:

Multi-locus phenotype

FYPO:0006800 - decreased centromere clustering at nuclear periphery during mitotic interphase

Genes:

Genotypes:

Single locus phenotype

FYPO:0000443 - abnormal protein localization during vegetative growth

Genes:

Genotypes:

FYPO:0006800 - decreased centromere clustering at nuclear periphery during mitotic interphase

Genes:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0002339 - decreased protein localization to nuclear periphery

Genes:

Genotypes:

FYPO:0002778 - decreased protein sumoylation during vegetative growth

Genes:

Genotypes:

FYPO:0000644 - normal protein localization during vegetative growth

Genes:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

Genes:

Genotypes: