PomBase home

Reference - PMID:39878217 - The ortholog of human DNAJC9 promotes histone H3-H4 degradation and is counteracted by Asf1 in fission yeast.

Reference summary

PubMed ID
PMID:39878217
Title
The ortholog of human DNAJC9 promotes histone H3-H4 degradation and is counteracted by Asf1 in fission yeast.
Authors
Ding Y, Li J, Jiang HL, Suo F, Shao GC, Zhang XR, Dong MQ, Liu CP, Xu RM, Du LL
Citation
Nucleic Acids Res 2025 Jan 24;53(3)
Publication year
2025
Abstract
Mammalian J-domain protein DNAJC9 interacts with histones H3-H4 and is important for cell proliferation. However, its exact function remains unclear. Here, we show that, in the fission yeast Schizosaccharomyces pombe, loss of Djc9, the ortholog of DNAJC9, renders the histone chaperone Asf1 no longer essential for growth. Utilizing AlphaFold-based structural prediction, we identified a histone-binding surface on Djc9 that binds to helix α3 of H3 in a manner that precludes simultaneous helix α3-binding by Asf1. Djc9 and Asf1 indeed compete for binding to the H3-H4 dimer in vitro, and an H3-α3 mutation impeding Djc9 binding also renders Asf1 non-essential, indicating that the role of Asf1 needed for growth in fission yeast is to prevent histone binding by Djc9. In the absence of Asf1, cell growth is hindered due to unrestrained Djc9-mediated downregulation of H3 and H4. In the presence of Asf1, Djc9 confers resistance to the DNA replication inhibitor hydroxyurea and dominant negative disease-related histone mutants by promoting the degradation of superfluous or dysfunctional histones. Our findings provide new insights into the function and mechanism of this conserved histone-binding protein.

Annotation

GO biological process

GO:0036205 - histone catabolic process

Genes:

GO molecular function

GO:0042393 - histone binding

Genes:

Multi-locus phenotype

FYPO:0000082 - decreased cell population growth at high temperature

Genes:

Genotypes:

FYPO:0004240 - decreased histone H3-K56 acetylation during vegetative growth

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

Genes:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

Genes:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0001690 - normal growth on camptothecin

Genes:

Genotypes:

FYPO:0000963 - normal growth on hydroxyurea

Genes:

Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

Genes:

Genotypes:

FYPO:0005751 - normal growth on Zeocin

Genes:

Genotypes:

FYPO:0005336 - normal level of histone H3 in cell

Genes:

Genotypes:

FYPO:0008392 - normal level of histone H4 in cell

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

Genes:

Genotypes:

Single locus phenotype

FYPO:0004481 - abolished cell population growth at high temperature

Genes:

Genotypes:

FYPO:0003247 - abolished histone H3 binding

Genes:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

Genes:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0007158 - decreased histone H3 binding

Genes:

Genotypes:

FYPO:0004240 - decreased histone H3-K56 acetylation during vegetative growth

Genes:

Genotypes:

FYPO:0004578 - decreased level of histone H3 in cell

Genes:

Genotypes:

FYPO:0007324 - decreased level of histone H4 in cell

Genes:

Genotypes:

FYPO:0001645 - decreased protein-protein interaction

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0008390 - increased level of histone H3 in cell

Genes:

Genotypes:

FYPO:0008391 - increased level of histone H4 in cell

Genes:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

Genes:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

Genes:

Genotypes:

FYPO:0006992 - normal chromatin silencing at centromere otr1R

Genes:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

Genes:

Genotypes:

FYPO:0001690 - normal growth on camptothecin

Genes:

Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

Genes:

Genotypes:

FYPO:0005751 - normal growth on Zeocin

Genes:

Genotypes:

FYPO:0008272 - normal histone H3 binding

Genes:

Genotypes:

FYPO:0008160 - normal histone H3-K56 acetylation during vegetative growth

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

Genes:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

Genes:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

Genes:

Genotypes:

FYPO:0005750 - sensitive to Zeocin

Genes:

Genotypes: