Reference - PMID:40185772 - A bifunctional snoRNA with separable activities in guiding rRNA 2'-O-methylation and scaffolding gametogenesis effectors.
Reference summary
- PubMed ID
- PMID:40185772
- Title
- A bifunctional snoRNA with separable activities in guiding rRNA 2'-O-methylation and scaffolding gametogenesis effectors.
- Authors
- Leroy E, Challal D, Pelletier S, Goncalves C, Menant A, Marchand V, Jaszczyszyn Y, van Dijk E, Naquin D, Andreani J, Motorin Y, Palancade B, Rougemaille M
- Citation
- Nat Commun 2025 Apr 05;16(1):3250
- Publication year
- 2025
- Abstract
- Small nucleolar RNAs are non-coding transcripts that guide chemical modifications of RNA substrates and modulate gene expression at the epigenetic and post-transcriptional levels. However, the extent of their regulatory potential and the underlying molecular mechanisms remain poorly understood. Here, we identify a conserved, previously unannotated intronic C/D-box snoRNA, termed snR107, hosted in the fission yeast long non-coding RNA mamRNA and carrying two independent cellular functions. On the one hand, snR107 guides site-specific 25S rRNA 2'-O-methylation and promotes pre-rRNA processing and 60S subunit biogenesis. On the other hand, snR107 associates with the gametogenic RNA-binding proteins Mmi1 and Mei2, mediating their reciprocal inhibition and restricting meiotic gene expression during sexual differentiation. Both functions require distinct cis-motifs within snR107, including a conserved 2'-O-methylation guiding sequence. Together, our results position snR107 as a dual regulator of rRNA modification and gametogenesis effectors, expanding our vision on the non-canonical functions exerted by snoRNAs in cell fate decisions.
Annotation
Multi-locus phenotype
Genes:
Genotypes:
- mamRNA-5'+3'SSmut(G511C,T512A,A736C,G737C nt)[Overexpression] mot2delta
- mot2delta snR107-ASE1mut(G19C,T20G,C21G,T22G,C24A,T25A,T26A,T27G,C29A,C30G,C31A,G32C nt)
- mot2delta snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
Single locus phenotype
Genes:
Genotypes:
- cgr1delta
- mamRNA-5'+3'SSmut(G511C,T512A,A736C,G737C nt)[Overexpression]
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
- snR107delta
Genes:
Genotypes:
- mei2-F644A(aa)[Ectopic]
- mmi1-Y352F(aa)
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
Genes:
Genotypes:
- mamRNA-5'+3'SSmut(G511C,T512A,A736C,G737C nt)[Overexpression]
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
- snR107delta
Genes:
Genotypes:
- mamRNA(11-737)delta(nt)
- mamRNA-3'SSmut(A736C,G737C nt)[Overexpression]
- mamRNA-5'+3'SSmut(G511C,T512A,A736C,G737C nt)[Overexpression]
- mamRNA-BP+3'SSmut(A725C,A736C,G737C nt)[Overexpression]
- mamRNA-introndelta(511-737 Δnt)
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
- snR107delta
Genes:
Genotypes:
- mamRNA-3'SSmut(A736C,G737C nt)[Overexpression]
- mamRNA-5'+3'SSmut(G511C,T512A,A736C,G737C nt)[Overexpression]
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
- snR107delta
Genes:
Genotypes:
- cgr1delta
- dbr1delta
- mamRNA(11-510)delta(nt)
- mamRNA-5'SSmut(G511C,T512A nt)[Overexpression]
- mamRNA-BPmut(A725C nt)[Overexpression]
- snR107-21ntdelta(58-78 Δnt)
- snR107-ASE1mut(G19C,T20G,C21G,T22G,C24A,T25A,T26A,T27G,C29A,C30G,C31A,G32C nt)
Genes:
Genotypes:
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
Genes:
Genotypes:
- mmi1delta
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
Genes:
Genotypes:
- snR107-ASE1mut(G19C,T20G,C21G,T22G,C24A,T25A,T26A,T27G,C29A,C30G,C31A,G32C nt)
Genes:
Genotypes:
- mmi1delta
- mot2delta
- snR107-21ntdelta(58-78 Δnt)
- snR107-ASE1mut(G19C,T20G,C21G,T22G,C24A,T25A,T26A,T27G,C29A,C30G,C31A,G32C nt)
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
Genes:
Genotypes:
- mamRNA(11-510)delta(nt)
- snR107-ASE1mut(G19C,T20G,C21G,T22G,C24A,T25A,T26A,T27G,C29A,C30G,C31A,G32C nt)
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
Genes:
Genotypes:
- snR107-21ntdelta(58-78 Δnt)
- snR107-ASE1mut(G19C,T20G,C21G,T22G,C24A,T25A,T26A,T27G,C29A,C30G,C31A,G32C nt)
- snR107-ASE2mut(C83T,T84A,T85C,G86T,C87G,C88G,A89C,G90A,T91A,A92G nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
- snR107delta
Genes:
Genotypes:
- mamRNA-5'+3'SSmut(G511C,T512A,A736C,G737C nt)[Overexpression]
- snR107-ASE1mut(G19C,T20G,C21G,T22G,C24A,T25A,T26A,T27G,C29A,C30G,C31A,G32C nt)
- snR107-kloopmut(C39T,G40A,A41G,C42T,T43C,A44G nt)
- snR107delta
Orthologs
- SNORD12C (HGNC:10105) Homo sapiens
- SNORD12 (HGNC:32708) Homo sapiens
- SNORD12B (HGNC:33573) Homo sapiens
- SNR190 (YNCJ0004C) Saccharomyces cerevisiae