PomBase home

Reference - PMID:40185772 - A bifunctional snoRNA with separable activities in guiding rRNA 2'-O-methylation and scaffolding gametogenesis effectors.

Reference summary

PubMed ID
PMID:40185772
Title
A bifunctional snoRNA with separable activities in guiding rRNA 2'-O-methylation and scaffolding gametogenesis effectors.
Authors
Leroy E, Challal D, Pelletier S, Goncalves C, Menant A, Marchand V, Jaszczyszyn Y, van Dijk E, Naquin D, Andreani J, Motorin Y, Palancade B, Rougemaille M
Citation
Nat Commun 2025 Apr 05;16(1):3250
Publication year
2025
Abstract
Small nucleolar RNAs are non-coding transcripts that guide chemical modifications of RNA substrates and modulate gene expression at the epigenetic and post-transcriptional levels. However, the extent of their regulatory potential and the underlying molecular mechanisms remain poorly understood. Here, we identify a conserved, previously unannotated intronic C/D-box snoRNA, termed snR107, hosted in the fission yeast long non-coding RNA mamRNA and carrying two independent cellular functions. On the one hand, snR107 guides site-specific 25S rRNA 2'-O-methylation and promotes pre-rRNA processing and 60S subunit biogenesis. On the other hand, snR107 associates with the gametogenic RNA-binding proteins Mmi1 and Mei2, mediating their reciprocal inhibition and restricting meiotic gene expression during sexual differentiation. Both functions require distinct cis-motifs within snR107, including a conserved 2'-O-methylation guiding sequence. Together, our results position snR107 as a dual regulator of rRNA modification and gametogenesis effectors, expanding our vision on the non-canonical functions exerted by snoRNAs in cell fate decisions.

Annotation

GO biological process

GO:0000027 - ribosomal large subunit assembly

Genes:

GO:0000451 - rRNA 2'-O-methylation

Genes:

GO cellular component

GO:0031428 - box C/D methylation guide snoRNP complex

Genes:

GO:0005730 - nucleolus

Genes:

GO molecular function

GO:0030562 - rRNA 2'-O-ribose methylation guide activity

Genes:

Genome organisation

PBO:0119739 - mamRNA is produced from a longer precursor transcript encompassing the downstream snoU14 gene and contains a previously unannotated intron, which itself encodes a C/D box snoRNA (snR107)

Genes:

Multi-locus phenotype

FYPO:0002960 - increased level of DSR-containing meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0008146 - increased ncRNA level during vegetative growth

Genes:

Genotypes:

FYPO:0003747 - normal level of DSR-containing meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

Single locus phenotype

FYPO:0008435 - abnormal cytosolic ribosomal large subunit assembly

Genes:

Genotypes:

FYPO:0002133 - abolished protein-RNA interaction

Genes:

Genotypes:

FYPO:0002134 - decreased protein-RNA interaction

Genes:

Genotypes:

FYPO:0001117 - decreased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0003040 - decreased RNA splicing, via splicosome

Genes:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

Genes:

Genotypes:

FYPO:0001135 - increased 35S rRNA precursor level

Genes:

Genotypes:

FYPO:0001979 - increased lariat intron level

Genes:

Genotypes:

FYPO:0002960 - increased level of DSR-containing meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0002933 - increased mature snoRNA level

Genes:

Genotypes:

FYPO:0001327 - increased protein level during vegetative growth

Genes:

Genotypes:

FYPO:0005120 - increased RNA level during meiotic cell cycle

Genes:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0003700 - increased snoRNA primary transcript level

Genes:

Genotypes:

FYPO:0003747 - normal level of DSR-containing meiotic gene mRNA during vegetative growth

Genes:

Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

Genes:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

Genes:

Genotypes:

FYPO:0002357 - normal protein-RNA interaction

Genes:

Genotypes:

FYPO:0003579 - normal RNA level during meiosis

Genes:

Genotypes:

FYPO:0006976 - normal RNA level during meiotic cell cycle

Genes:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

Genes:

Genotypes:

FYPO:0003058 - normal RNA localization

Genes:

Genotypes:

FYPO:0000590 - normal sporulation

Genes:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

Genes:

Genotypes:

FYPO:0008437 - RNA mislocalized to nucleolus during vegetative growth

Genes:

Genotypes:

FYPO:0003720 - snoRNA guided rRNA 2'-O-methylation abolished at specific site

Genes:

Genotypes:

FYPO:0008436 - snoRNA guided rRNA 2'-O-methylation level decreased at specific site

Genes:

Genotypes:

Warnings

PBO:0000070 - gene structure updated

Genes:

PBO:0000082 - new gene

Genes:

Orthologs