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Reference - PMID:41786738 - An H3K14ub-H3K9me3 feedback circuit governs heterochromatin spreading and inheritance in fission yeast.

Reference summary

PubMed ID
PMID:41786738
Title
An H3K14ub-H3K9me3 feedback circuit governs heterochromatin spreading and inheritance in fission yeast.
Authors
Toda T, Zang J, Qi H, Fang Y, Jiang P, Shan CM, Wong J, Jia S
Citation
Nat Commun 2026 Mar 05;
Publication year
2026
Abstract
Heterochromatin is a bistable chromatin state essential for genome stability and gene regulation. Its spreading and inheritance have long been explained by a "read-write" cycle in which histone methyltransferases bind pre-existing tri-methylation of histone H3 lysine 9 (H3K9me3) and propagate this mark to neighboring nucleosomes. However, the weak affinity and limited catalytic stimulation provided by H3K9me3 alone challenge this model. The fission yeast H3K9 methyltransferase Clr4 functions within the CLRC complex, which also catalyzes histone H3 lysine 14 ubiquitination (H3K14ub). Here we show that H3K14ub and H3K9me3 form a feedback loop: H3K14ub strongly stimulates Clr4 activity on nucleosomes, while both H3K14ub and H3K9me3 stabilize CLRC binding to chromatin. Even subtle perturbations that disrupt this feedback, such as mutating one of the three H3 genes to prevent ubiquitination or methylation, or impairing Clr3-mediated H3K14 deacetylation, compromises heterochromatin spreading and inheritance. Conversely, counteracting activities, such as H3K14 acetylation by Mst2 and H3K9 demethylation by Epe1, synergistically constrains heterochromatin expansion. Thus, rather than relying solely on the weak H3K9me3 "read-write" cycle, heterochromatin is maintained through an integrated circuit of ubiquitination, deacetylation, and methylation, which governs spreading and inheritance.

Annotation

Multi-locus phenotype

FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

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FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0007478 - decreased epigenetic heterochromatin inheritance

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FYPO:0010068 - decreased histone H3-K14 ubiquitination at pericentric heterochromatin during vegetative growth

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FYPO:0010069 - decreased histone H3-K14 ubiquitination at silent mating-type cassette heterochromatin during vegetative growth

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FYPO:0005845 - decreased histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

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FYPO:0008422 - decreased protein localization to pericentric heterochromatin

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FYPO:0001355 - decreased vegetative cell population growth

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FYPO:0003102 - increased histone H3-K9 methylation at protein coding gene during vegetative growth

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FYPO:0010075 - normal histone H3-K9 methylation at protein coding gene during vegetative growth

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FYPO:0001357 - normal vegetative cell population growth

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Single locus phenotype

FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

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FYPO:0007376 - abolished epigenetic heterochromatin inheritance

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FYPO:0005844 - abolished histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0007478 - decreased epigenetic heterochromatin inheritance

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FYPO:0010068 - decreased histone H3-K14 ubiquitination at pericentric heterochromatin during vegetative growth

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FYPO:0010072 - decreased histone H3-K14 ubiquitination at silent mating-type cassette cenH region during vegetative growth

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FYPO:0010069 - decreased histone H3-K14 ubiquitination at silent mating-type cassette heterochromatin during vegetative growth

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FYPO:0010067 - decreased histone H3-K14 ubiquitination at subtelomeric heterochromatin during vegetative growth

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FYPO:0000883 - decreased histone H3-K9 trimethylation at centromere during vegetative growth

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FYPO:0010073 - decreased histone H3-K9 trimethylation at silent mating-type cassette cenH region during vegetative growth

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FYPO:0005154 - decreased protein localization to heterochromatin at mat2P silent mating-type cassette

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FYPO:0008422 - decreased protein localization to pericentric heterochromatin

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FYPO:0010074 - increased protein localization to heterochromatin at silent mating-type cassette cenH region

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FYPO:0004380 - increased protein localization to pericentric heterochromatin during vegetative growth

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FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

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FYPO:0007479 - normal epigenetic heterochromatin inheritance

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FYPO:0010071 - normal histone H3-K14 ubiquitination at silent mating-type cassette during vegetative growth

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FYPO:0008364 - normal histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

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