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Reference - PMID:42030144 - Gene loss, repression, amplification, and horizontal acquisition shape galactose/melibiose metabolism in fission yeast.

Reference summary

PubMed ID
PMID:42030144
Title
Gene loss, repression, amplification, and horizontal acquisition shape galactose/melibiose metabolism in fission yeast.
Authors
Du XM, Suo F, Du LL
Citation
Proc Natl Acad Sci U S A 2026 Apr 28;123(17):e2532532123
Publication year
2026
Abstract
Natural variation in metabolism is a key driver of microbial adaptation. While galactose utilization is well studied in budding yeasts, it remains poorly understood in the fission yeast Schizosaccharomyces pombe . Here, we reveal extensive natural variation in galactose utilization across S. pombe isolates-from complete deficiency (Gal - ) to exceptionally fast growth (Gal F ). Gal - strains fall into two classes: one with deletions of the gal gene cluster (via three distinct mechanisms) and another with intact but repressed gal genes. In contrast, Gal F is driven by an amplified gene cluster absent from the reference genome-the gal - mel cluster (GMC)-which also confers melibiose utilization (Mel + ). Mel + is exclusively linked to the GMC, except in one strain harboring a standalone melibiase gene. Phylogenetic analyses indicate that horizontal gene transfer may underlie these adaptive traits. Together, our work demonstrates how diverse mechanisms-gene loss, repression, amplification, and horizontal acquisition-shape metabolic diversity and ecological specialization in fission yeast.

Annotation

GO biological process

GO:0005995 - melibiose catabolic process

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GO molecular function

GO:0005354 - galactose transmembrane transporter activity

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Multi-locus phenotype

FYPO:0003730 - abolished cell population growth on galactose carbon source

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FYPO:0010092 - abolished cell population growth on galactose/ethanol carbon source

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FYPO:0010093 - decreased cell population growth on galactose/ethanol carbon source

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FYPO:0001407 - decreased cell population growth on glucose carbon source

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FYPO:0010094 - normal growth on galactose/ethanol carbon source

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FYPO:0001409 - normal growth on glycerol carbon source

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FYPO:0003898 - normal growth on glycerol/ethanol carbon source

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Single locus phenotype

FYPO:0003730 - abolished cell population growth on galactose carbon source

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Genotypes:

FYPO:0010092 - abolished cell population growth on galactose/ethanol carbon source

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FYPO:0000251 - decreased cell population growth on galactose carbon source

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FYPO:0010093 - decreased cell population growth on galactose/ethanol carbon source

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Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

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FYPO:0003731 - normal growth on galactose carbon source

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Genotypes:

FYPO:0010094 - normal growth on galactose/ethanol carbon source

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Genotypes:

FYPO:0001409 - normal growth on glycerol carbon source

Genes:

Genotypes:

FYPO:0003898 - normal growth on glycerol/ethanol carbon source

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