bfr1 (SPCC18B5.01c)


Gene Standard Namebfr1 Characterisation Statuspublished
Systematic IDSPCC18B5.01c Feature Typeprotein coding
Synonymshba2, SPCPJ732.04c Name Description
Productbrefeldin A transmembrane transporter Bfr1 Product Size1530aa, 171.75 kDa
Genomic Location Chromosome III, 715435-709302 (6134nt); CDS:714007-709415 (4593nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
ATP binding551
Annotation ExtensionEvidenceWith/FromReference
ATPase activity, coupled to transmembrane movement of substances52
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
drug export1
Annotation ExtensionEvidenceWith/FromReference
transmembrane transport346
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
integral component of membrane969
Annotation ExtensionEvidenceWith/FromReference
plasma membrane256
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
normal growth on amphotericin Bbfr1+ (wild type)17
normal growth on caffeinebfr1Δ14
normal growth on clotrimazolebfr1+ (wild type)13
normal growth on FR901464bfr1Δ10
normal growth on mevastatinbfr1+ (wild type)1
normal growth on miconazolebfr1+ (wild type)12
normal growth on oligomycinbfr1Δ10
normal growth on staurosporinebfr1Δ8
resistance to actinomycin Dbfr1+ (wild type)4
resistance to anisomycinbfr1+ (wild type)1
resistance to brefeldin Abfr1+ (wild type)27
resistance to ceruleninbfr1+ (wild type)1
resistance to clotrimazolebfr1+ (wild type)19
resistance to cycloheximidebfr1+ (wild type)6
resistance to cytochalasin Bbfr1+ (wild type)3
resistance to K-252abfr1+ (wild type)4
resistance to staurosporinebfr1+ (wild type)16
resistance to tamoxifenbfr1+ (wild type)61
resistance to terbinafinebfr1+ (wild type)14
sensitive to actinomycin Dbfr1Δ3
sensitive to brefeldin Abfr1Δ16
sensitive to ceruleninbfr1Δ11
sensitive to clotrimazolebfr1Δ108
sensitive to cycloheximidebfr1Δ31
sensitive to cytochalasin Bbfr1Δ2
sensitive to fluconazolebfr1Δ4
sensitive to G418bfr1Δ5
sensitive to hygromycin Bbfr1Δ16
sensitive to K-252abfr1Δ4
sensitive to miconazolebfr1Δ40
sensitive to MTTbfr1Δ1
sensitive to myriocin during vegetative growthbfr1Δ2
sensitive to purvalanol Abfr1Δ3
sensitive to staurosporinebfr1Δ15
sensitive to terbinafinebfr1Δ103
sensitive to tributyltinbfr1Δ3
sensitive to trichostatin Abfr1Δ44
sensitive to tunicamycinbfr1Δ8
sensitive to wortmanninbfr1Δ4
viable vegetative cell populationbfr1Δ3862

Cell Phenotype

Term NameGenotypesCount
increased pre-mRNA level89
affecting fet5bfr1Δ
viable vegetative cell with normal cell morphologybfr1Δ3103

FYPO Multi-allele Phenotypes

Population Phenotype

Term NameGenotypes
normal growth on cadmiumbfr1Δ, pdr1Δ
resistance to caffeinetrr1Δ, bfr1Δ
sensitive to brefeldin Abfr1Δ, pmd1Δ
sensitive to caffeine during vegetative growthbfr1Δ, trr1Δ, caf5Δ
sensitive to cycloheximidebfr1Δ, pmd1Δ
sensitive to etoposidebfr1Δ, pmd1Δ
sensitive to fluconazolebfr1Δ, pmd1Δ
sensitive to FR901464bfr1Δ, pmd1Δ
sensitive to G418bfr1Δ, pmd1Δ
sensitive to hygromycin Bbfr1Δ, pmd1Δ
sensitive to leptomycin Bbfr1Δ, pmd1Δ
sensitive to lovastatinbfr1Δ, pmd1Δ
sensitive to mevastatinbfr1Δ, pmd1Δ
sensitive to MTTbfr1Δ, pmd1Δ
sensitive to myriocin during vegetative growthbfr1Δ, pmd1Δ
sensitive to radicicolbfr1Δ, pmd1Δ
sensitive to staurosporinebfr1Δ, pmd1Δ
sensitive to streptothricinbfr1Δ, pmd1Δ
sensitive to trichostatin Abfr1Δ, pmd1Δ
sensitive to tunicamycinbfr1Δ, pmd1Δ
sensitive to wortmanninbfr1Δ, pmd1Δ
Target Of
OntologyRelationshipGeneProduct
FYPO affected by mutation in atf1 transcription factor, Atf-CREB family Atf1
FYPO affected by mutation in crm1 importin family nuclear export receptor Crm1
FYPO affected by mutation in pap1 transcription factor Pap1/Caf3
FYPO affected by mutation in prt1 transcription factor (predicted)
FYPO affected by mutation in sty1 MAP kinase Sty1
GO regulated by atf1 transcription factor, Atf-CREB family Atf1
GO regulated by pap1 transcription factor Pap1/Caf3
GO regulated by prt1 transcription factor (predicted)
GO regulated by sty1 MAP kinase Sty1
GO substrate of sst2 human AMSH/STAMBP protein homolog, ubiquitin specific-protease
GO substrate of ubp15 ubiquitin C-terminal hydrolase Ubp15
GO substrate of ubp4 ubiquitin C-terminal hydrolase Ubp4
GO substrate of ubp5 ubiquitin C-terminal hydrolase Ubp5
GO substrate of ubp9 ubiquitin C-terminal hydrolase Ubp9
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons715435..709302
mRNA715435..709302
5' UTR715435..714008PMID:21511999
CDS714007..709415
3' UTR709414..709302AU011775
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF14510 Pfam IPR029481 ABC-transporter extracellular N-terminal domain 79 158 1
PF06422 Pfam IPR010929 CDR ABC transporter 742 831 2
PF06422 Pfam IPR010929 CDR ABC transporter 1473 1514 2
PF01061 Pfam IPR013525 ABC-2 type transporter 521 731 2
PF01061 Pfam IPR013525 ABC-2 type transporter 1202 1413 2
PF00005 Pfam IPR003439 ABC transporter-like 902 1052 19
PF00005 Pfam IPR003439 ABC transporter-like 185 336 19
SM00382 SMART IPR003593 AAA+ ATPase domain 910 1110 70
TMhelix TMHMM 619 641 950
TMhelix TMHMM 1490 1512 950
TMhelix TMHMM 573 595 950
TMhelix TMHMM 1290 1323 950
TMhelix TMHMM 1253 1275 950
TMhelix TMHMM 648 670 950
TMhelix TMHMM 1336 1358 950
TMhelix TMHMM 787 809 950
TMhelix TMHMM 538 560 950
TMhelix TMHMM 685 707 950
TMhelix TMHMM 1218 1240 950
TMhelix TMHMM 1373 1395 950
PS50893 Prosite Profiles IPR003439 ABC transporter-like 882 1125 19
PS50893 Prosite Profiles IPR003439 ABC transporter-like 153 410 19
PS00211 Prosite Patterns IPR017871 ABC transporter, conserved site 309 323 14
PTHR19241 HMMPANTHER 220 473 2
PTHR19241 HMMPANTHER 494 750 2
PTHR19241:SF299 HMMPANTHER 220 473 2
PTHR19241 HMMPANTHER 1457 1521 2
PTHR19241 HMMPANTHER 854 1428 2
PTHR19241:SF299 HMMPANTHER 1457 1521 2
PTHR19241:SF299 HMMPANTHER 854 1428 2
PTHR19241:SF299 HMMPANTHER 494 750 2
3.40.50.300 Gene3D IPR027417 P-loop containing nucleoside triphosphate hydrolase 173 399 288
3.40.50.300 Gene3D IPR027417 P-loop containing nucleoside triphosphate hydrolase 883 1122 288
SSF52540 SuperFamily IPR027417 P-loop containing nucleoside triphosphate hydrolase 174 401 294
SSF52540 SuperFamily IPR027417 P-loop containing nucleoside triphosphate hydrolase 888 1112 294
TIGR00956 TIGRFAM IPR005285 Pleiotropic drug resistance protein PDR/CDR 108 1516 1

View domain organization at Pfam

Term IDTerm NameReferenceCount
PBO:0001765ABC transporter familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0001765
PBO:0001815PDR subfamilyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0001815

Term IDTerm NameReferenceCount
SO:0001812transmembrane_helix465

Protein Properties

Ave. residue weight 112.26 Da
Charge -4.00
Codon Adaptation Index 0.50
Isoelectric point 6.32
Molecular weight 171.75 kDa
Number of residues 1530
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 2293
present during mitotic M phaseS489
present during mitotic M phaseS475
present during mitotic M phaseS861
present during mitotic M phaseS486
present during mitotic M phaseS64
present during mitotic M phaseS476
present during mitotic M phaseS56
present during mitotic M phaseS1188
S27, S29, S30, S36, S37, S38, S56, S475, S476, S486, S1188
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S489 PMID:21712547
present during mitotic M phase experimental evidence S475 PMID:21712547
present during mitotic M phase experimental evidence S861 PMID:21712547
present during mitotic M phase experimental evidence S486 PMID:21712547
present during mitotic M phase experimental evidence S64 PMID:21712547
present during mitotic M phase experimental evidence S476 PMID:21712547
present during mitotic M phase experimental evidence S56 PMID:21712547
present during mitotic M phase experimental evidence S1188 PMID:21712547
IDA S37 PMID:25720772
IDA S29 PMID:25720772
IDA S486 PMID:25720772
IDA S36 PMID:25720772
experimental evidence S475 PMID:24763107
IDA S30 PMID:25720772
experimental evidence S476 PMID:24763107
experimental evidence S486 PMID:24763107
IDA S38 PMID:25720772
IDA S27 PMID:25720772
experimental evidence S56 PMID:24763107
IDA S1188 PMID:25720772
O-phospho-L-threonine 1087
present during mitotic M phaseT58
present during mitotic M phaseT471
present during mitotic M phaseT472
present during mitotic M phaseT492
present during mitotic M phaseT1186
level fluctuates during mitotic cell cycleT472
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence T58 PMID:21712547
present during mitotic M phase experimental evidence T471 PMID:21712547
present during mitotic M phase experimental evidence T472 PMID:21712547
present during mitotic M phase experimental evidence T492 PMID:21712547
present during mitotic M phase experimental evidence T1186 PMID:21712547
level fluctuates during mitotic cell cycle experimental evidence T472 PMID:24763107
phosphorylated residue 2515
Annotation ExtensionEvidenceResidueReference
IDA PMID:19547744
sumoylated lysine 174
Annotation ExtensionEvidenceResidueReference
IDA PMID:26404184
O-phosphorylated residueS27,S29, S27,S29,S36, S27,S30, S27,S36, S29,S30, S29,S36,S37, S29,S38, S30,S38, S36,S37, S36,S38, S37,S38, S475,S476,S486, S476,S486,S489, S486,S489, S486,T491, S486,T492 2461
Annotation ExtensionEvidenceResidueReference
IDA S29,S30 PMID:25720772
IDA S30,S38 PMID:25720772
IDA S486,T491 PMID:25720772
IDA S27,S30 PMID:25720772
IDA S486,T492 PMID:25720772
IDA S36,S38 PMID:25720772
IDA S29,S38 PMID:25720772
IDA S27,S29 PMID:25720772
IDA S27,S36 PMID:25720772
IDA S37,S38 PMID:25720772
IDA S27,S29,S36 PMID:25720772
IDA S475,S476,S486 PMID:25720772
IDA S29,S36,S37 PMID:25720772
IDA S476,S486,S489 PMID:25720772
IDA S36,S37 PMID:25720772
IDA S486,S489 PMID:25720772
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelincreased in presence of purvalanol A expression microarray evidencePMID:22840777
increased during GO:0070301Northern assay evidencePMID:9585505
present during GO:0072690reverse transcription polymerase chain reaction transcription evidencePMID:22840777
increased during GO:0034599expression microarray evidencePMID:12529438
increased in presence of purvalanol A reverse transcription polymerase chain reaction transcription evidencePMID:22840777
present during GO:0072690Northern assay evidencePMID:9532803
present during GO:0072690Northern assay evidencePMID:9585505
increased during GO:0071409reverse transcription polymerase chain reaction transcription evidencePMID:22840777

Quantitative Gene Expression

View graphical display of gene expression data for bfr1 (SPCC18B5.01c)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
17011during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
15946during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
17353during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
16023during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
17758during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
11505.73during GO:0072690PECO:0000126,
PECO:0000005
population wideexperimental evidencePMID:23101633
6503.26during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000126,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
16during GO:0072690PECO:0000126,
PECO:0000005
population wideexperimental evidencePMID:23101633
3.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000126,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4608
conserved in eukaryotes4516
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPCC18B5.01c into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured byimp1importin alpha Affinity Capture-MSPMID:25963819
affinity captured bysdj1glyoxylase III sdj1 Affinity Capture-MSPMID:26152728
Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPCC18B5.01c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
synthetic growth defect withpap1transcription factor Pap1/Caf3 Synthetic Growth DefectPMID:22840777
synthetic growth defect withmfs1transmembrane transporter Mfs1 Synthetic Growth DefectPMID:22840777
synthetic growth defect withmfs3transmembrane transporter Mfs3 Synthetic Growth DefectPMID:22840777
synthetic growth defect withprt1transcription factor (predicted) Synthetic Growth DefectPMID:22840777
synthetic growth defect withpmd1leptomycin transmembrane transporter Pmd1 Synthetic Growth DefectPMID:21340088
synthetically rescued bymfs3transmembrane transporter Mfs3 Synthetic RescuePMID:22840777
synthetically rescued bytrr1thioredoxin reductase Trr1 Synthetic RescuePMID:19672306
negative genetic interaction withprt1transcription factor (predicted) Negative GeneticPMID:22840777
negative genetic interaction withmfs3transmembrane transporter Mfs3 Negative GeneticPMID:22840777
negative genetic interaction withmfs1transmembrane transporter Mfs1 Negative GeneticPMID:22840777
positive genetic interaction withmfs3transmembrane transporter Mfs3 Positive GeneticPMID:22840777
External References
Database Identifier Description
NBRP SPCC18B5.01c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC18B5.01c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC18B5.01c BioGRID Interaction Datasets
Expression Viewer SPCC18B5.01c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC18B5.01c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC18B5.01c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC18B5.01c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC18B5.01c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC18B5.01c Transcriptome Viewer (Bähler Lab)
GEO SPCC18B5.01c GEO profiles
PInt SPCC18B5.01c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC18B5.01c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC18B5.01c Fission yeast phenotypic data & analysis
Cyclebase SPCC18B5.01c.1 Cell Cycle Data
SPD / RIKEN49/49H06Orfeome Localization Data
UniProtKB/SwissProtP41820Brefeldin A resistance protein
ModBaseP41820Database of comparative protein structure models
STRINGP41820Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_587932brefeldin A efflux transporter Bfr1
RefSeq mRNANM_001022923972h- brefeldin A efflux transporter Bfr1 (bfr1), mRNA
European Nucleotide ArchiveAAB33744.1ENA Protein Mapping
European Nucleotide ArchiveBAA19929.1ENA Protein Mapping
European Nucleotide ArchiveCAA58062.1ENA Protein Mapping
European Nucleotide ArchiveCAC34990.1ENA Protein Mapping
UniParcUPI000004C4D2UniProt Archive

Literature for bfr1

Search: Europe PMC or PubMed

Release Version: PomBase:30_62 - 30 Jan 2017