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Phenotype ontology term - FYPO:0000142 - gene expression phenotype

Term summary

ID
FYPO:0000142
Name
gene expression phenotype
Ontology or CV name
Phenotype
Definition
A cellular process phenotype that affects gene expression. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation.

Parents

Annotation

Multi-locus phenotype

FYPO:0000142 - gene expression phenotype

References:

Genes:

Genotypes:

FYPO:0007409 - abnormal mRNA alternative polyadenylation

References:

Genes:

Genotypes:

FYPO:0000204 - abnormal mRNA export from nucleus

References:

Genes:

Genotypes:

FYPO:0000044 - abnormal negative regulation of transcription by glucose

References:

Genes:

Genotypes:

FYPO:0004988 - abnormal RNA level oscillation during mitotic cell cycle

References:

Genes:

Genotypes:

FYPO:0003596 - abnormal snRNA 3'-end processing

References:

Genes:

Genotypes:

FYPO:0004065 - abnormal transcription elongation from RNA polymerase II promoter

References:

Genes:

Genotypes:

FYPO:0007334 - abolished chromatin silencing at centromere outer repeat

References:

Genes:

Genotypes:

FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

References:

Genes:

Genotypes:

FYPO:0002879 - abolished transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0006148 - abolished transcription during nitrogen starvation

References:

Genes:

Genotypes:

FYPO:0002353 - decreased chromatin silencing

References:

Genes:

Genotypes:

FYPO:0002834 - decreased chromatin silencing at centromere

References:

Genes:

Genotypes:

FYPO:0003217 - decreased chromatin silencing at centromere central core

References:

Genes:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

Genes:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

References:

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genes:

Genotypes:

FYPO:0007212 - decreased chromatin silencing at heterochromatin island

References:

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genes:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genes:

Genotypes:

FYPO:0007009 - decreased heterochromatin assembly by small RNA

References:

Genes:

Genotypes:

FYPO:0005288 - decreased negative regulation of transcription by glucose

References:

Genes:

Genotypes:

FYPO:0002522 - decreased poly(A)+ mRNA export from nucleus

References:

Genes:

Genotypes:

FYPO:0004009 - decreased rRNA transcription

References:

Genes:

Genotypes:

FYPO:0002876 - decreased transcription

References:

Genes:

Genotypes:

FYPO:0003120 - decreased transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0006544 - decreased transcription during mitosis

References:

Genes:

Genotypes:

FYPO:0005118 - decreased transcription during nitrogen starvation

References:

Genes:

Genotypes:

FYPO:0003251 - decreased transcription from SRE promoter

References:

Genes:

Genotypes:

FYPO:0001798 - decreased translation

References:

Genes:

Genotypes:

FYPO:0004010 - decreased translation of ribosomal proteins during vegetative growth

References:

Genes:

Genotypes:

FYPO:0006355 - delayed onset of transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0002913 - increased antisense RNA transcription

References:

Genes:

Genotypes:

FYPO:0004540 - increased chromatin silencing

References:

Genes:

Genotypes:

FYPO:0005315 - increased chromatin silencing at centromere central core

References:

Genes:

Genotypes:

FYPO:0006994 - increased chromatin silencing at centromere otr1L

References:

Genes:

Genotypes:

FYPO:0006299 - increased chromatin silencing at centromere outer repeat

References:

Genes:

Genotypes:

FYPO:0006079 - increased chromatin silencing at rDNA

References:

Genes:

Genotypes:

FYPO:0004376 - increased chromatin silencing at silent mating-type cassette

References:

Genes:

Genotypes:

FYPO:0004542 - increased chromatin silencing at subtelomere

References:

Genes:

Genotypes:

FYPO:0006548 - increased gene expression

References:

Genes:

Genotypes:

FYPO:0000577 - increased gene silencing

References:

Genes:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

References:

Genes:

Genotypes:

FYPO:0007421 - increased transcription at telomere during G0

References:

Genes:

Genotypes:

FYPO:0002908 - increased transcription at telomere during vegetative growth

References:

Genes:

Genotypes:

FYPO:0007787 - increased transcription during cell cycle arrest at meiotic G2/MI transition

References:

Genes:

Genotypes:

FYPO:0002895 - increased transcription during cellular response to calcium ion

References:

Genes:

Genotypes:

FYPO:0001854 - increased transcription during cellular response to iron

References:

Genes:

Genotypes:

FYPO:0002878 - increased transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0000780 - increased transcription during vegetative growth

References:

Genes:

Genotypes:

FYPO:0000239 - increased transcription from MCB promoter

References:

Genes:

Genotypes:

FYPO:0007615 - increased transcription from STREP promoter during cellular response to nitric oxide

References:

Genes:

Genotypes:

FYPO:0004581 - increased transcriptional response to pheromone

References:

Genes:

Genotypes:

FYPO:0005993 - normal cytoplasmic translation

References:

Genes:

Genotypes:

FYPO:0001865 - normal negative regulation of transcription by glucose

References:

Genes:

Genotypes:

FYPO:0007877 - normal regulation of translation in response to chemical

References:

Genes:

Genotypes:

FYPO:0004235 - normal RNA level oscillation during mitotic cell cycle

References:

Genes:

Genotypes:

FYPO:0006279 - normal termination of RNA polymerase II transcription

References:

Genes:

Genotypes:

FYPO:0006742 - normal transcription from MCB promoter

References:

Genes:

Genotypes:

FYPO:0003911 - UGA suppression

References:

Genes:

Genotypes:

Single locus phenotype

FYPO:0006298 - abnormal 5.8S rRNA 3'-end processing

References:

Genes:

Genotypes:

FYPO:0003686 - abnormal box C/D snoRNA 3'-end processing

References:

Genes:

Genotypes:

FYPO:0000146 - abnormal chromatin silencing at centromere

References:

Genes:

Genotypes:

FYPO:0000640 - abnormal chromatin silencing at centromere central core

References:

Genes:

Genotypes:

FYPO:0002346 - abnormal chromatin silencing at centromere outer repeat

References:

Genes:

Genotypes:

FYPO:0000206 - abnormal chromatin silencing at rDNA

References:

Genes:

Genotypes:

FYPO:0000156 - abnormal chromatin silencing at silent mating-type cassette

References:

Genes:

Genotypes:

FYPO:0000169 - abnormal chromatin silencing at subtelomere

References:

Genes:

Genotypes:

FYPO:0003124 - abnormal cytoplasmic translation

References:

Genes:

Genotypes:

FYPO:0000187 - abnormal heterochromatin assembly by small RNA

References:

Genes:

Genotypes:

FYPO:0007409 - abnormal mRNA alternative polyadenylation

References:

Genes:

Genotypes:

FYPO:0000204 - abnormal mRNA export from nucleus

References:

Genes:

Genotypes:

FYPO:0000044 - abnormal negative regulation of transcription by glucose

References:

Genes:

Genotypes:

FYPO:0004276 - abnormal negative regulation of transcription during G0

References:

Genes:

Genotypes:

FYPO:0000624 - abnormal negative regulation of transcription during vegetative growth

References:

Genes:

Genotypes:

FYPO:0000183 - abnormal poly(A)+ mRNA export from nucleus

References:

Genes:

Genotypes:

FYPO:0000623 - abnormal positive regulation of transcription

References:

Genes:

Genotypes:

FYPO:0004275 - abnormal positive regulation of transcription during G0

References:

Genes:

Genotypes:

FYPO:0004527 - abnormal regulation of transcription during vegetative growth

References:

Genes:

Genotypes:

FYPO:0006474 - abnormal regulation of translation in response to amino acid starvation

References:

Genes:

Genotypes:

FYPO:0005043 - abnormal regulation of translation in response to UV

References:

Genes:

Genotypes:

FYPO:0008155 - abnormal regulatory lncRNA 3'-end processing

References:

Genes:

Genotypes:

FYPO:0005909 - abnormal RNA 3'-end processing during cellular response to endoplasmic reticulum stress

References:

Genes:

Genotypes:

FYPO:0004492 - abnormal RNA 5'-end processing

References:

Genes:

Genotypes:

FYPO:0004988 - abnormal RNA level oscillation during mitotic cell cycle

References:

Genes:

Genotypes:

FYPO:0003596 - abnormal snRNA 3'-end processing

References:

Genes:

Genotypes:

FYPO:0004811 - abnormal termination of RNA polymerase II transcription

References:

Genes:

Genotypes:

FYPO:0004814 - abnormal termination of RNA polymerase II transcription at highly transcribed protein-coding genes

References:

Genes:

Genotypes:

FYPO:0004812 - abnormal termination of RNA polymerase II transcription at rDNA

References:

Genes:

Genotypes:

FYPO:0004813 - abnormal termination of RNA polymerase II transcription at tDNA

References:

Genes:

Genotypes:

FYPO:0004065 - abnormal transcription elongation from RNA polymerase II promoter

References:

Genes:

Genotypes:

FYPO:0006444 - abnormal transcriptional response to amino acid starvation

References:

Genes:

Genotypes:

FYPO:0001797 - abnormal translation

References:

Genes:

Genotypes:

FYPO:0001554 - abnormal tRNA processing

References:

Genes:

Genotypes:

FYPO:0007335 - abolished chromatin silencing at centromere inner repeat

References:

Genes:

Genotypes:

FYPO:0007334 - abolished chromatin silencing at centromere outer repeat

References:

Genes:

Genotypes:

FYPO:0007598 - abolished chromatin silencing at ectopic tethering site

References:

Genes:

Genotypes:

FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

References:

Genes:

Genotypes:

FYPO:0006411 - abolished histone RNA level oscillation during mitotic cell cycle

References:

Genes:

Genotypes:

FYPO:0004530 - abolished mitochondrial translation

References:

Genes:

Genotypes:

FYPO:0003918 - abolished nonsense-mediated decay

References:

Genes:

Genotypes:

FYPO:0007766 - abolished protein level oscillation during mitotic cell cycle

References:

Genes:

Genotypes:

FYPO:0003597 - abolished snRNA 3'-end processing

References:

Genes:

Genotypes:

FYPO:0002879 - abolished transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0001853 - abolished transcription during iron starvation

References:

Genes:

Genotypes:

FYPO:0004986 - abolished transcription during meiotic cell cycle

References:

Genes:

Genotypes:

FYPO:0006148 - abolished transcription during nitrogen starvation

References:

Genes:

Genotypes:

FYPO:0001443 - abolished transcription during vegetative growth

References:

Genes:

Genotypes:

FYPO:0005497 - abolished transcription from CRE promoter

References:

Genes:

Genotypes:

FYPO:0005500 - abolished transcription from CRE promoter during cellular response to miconazole

References:

Genes:

Genotypes:

FYPO:0003796 - abolished transcription from RNA polymerase II promoter

References:

Genes:

Genotypes:

FYPO:0003655 - abolished tRNA splicing

References:

Genes:

Genotypes:

FYPO:0007481 - attenuated increase in transcription during cellular response to stress in presence of small molecule

References:

Genes:

Genotypes:

FYPO:0004418 - cut cell with decreased poly(A)+ mRNA export from nucleus

References:

Genes:

Genotypes:

FYPO:0002353 - decreased chromatin silencing

References:

Genes:

Genotypes:

FYPO:0002834 - decreased chromatin silencing at centromere

References:

Genes:

Genotypes:

FYPO:0003217 - decreased chromatin silencing at centromere central core

References:

Genes:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

Genes:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

References:

Genes:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genes:

Genotypes:

FYPO:0008454 - decreased chromatin silencing at ectopic tethering site

References:

Genes:

Genotypes:

FYPO:0007212 - decreased chromatin silencing at heterochromatin island

References:

Genes:

Genotypes:

FYPO:0003216 - decreased chromatin silencing at rDNA

References:

Genes:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genes:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genes:

Genotypes:

FYPO:0007883 - decreased cleavage-dependent termination of RNA polymerase II transcription

References:

Genes:

Genotypes:

FYPO:0007317 - decreased cytoplasmic translation

References:

Genes:

Genotypes:

FYPO:0003125 - decreased cytoplasmic translational initiation

References:

Genes:

Genotypes:

FYPO:0006231 - decreased cytoplasmic translational initiation during cellular response to osmotic stress

References:

Genes:

Genotypes:

FYPO:0006230 - decreased cytoplasmic translational initiation during cellular response to oxidative stress

References:

Genes:

Genotypes:

FYPO:0007223 - decreased establishment of chromatin silencing at centromere outer repeat region

References:

Genes:

Genotypes:

FYPO:0006549 - decreased gene expression

References:

Genes:

Genotypes:

FYPO:0006550 - decreased gene expression during nitrogen starvation

References:

Genes:

Genotypes:

FYPO:0007009 - decreased heterochromatin assembly by small RNA

References:

Genes:

Genotypes:

FYPO:0002056 - decreased mitochondrial translation

References:

Genes:

Genotypes:

FYPO:0005288 - decreased negative regulation of transcription by glucose

References:

Genes:

Genotypes:

FYPO:0003917 - decreased nonsense-mediated decay

References:

Genes:

Genotypes:

FYPO:0006809 - decreased nuclear-transcribed mRNA poly(A) tail shortening

References:

Genes:

Genotypes:

FYPO:0002522 - decreased poly(A)+ mRNA export from nucleus

References:

Genes:

Genotypes:

FYPO:0008037 - decreased rate of transcription elongation from RNA polymerase II promoter

References:

Genes:

Genotypes:

FYPO:0002893 - decreased repression of transcription during cellular response to cAMP

References:

Genes:

Genotypes:

FYPO:0003008 - decreased repression of transcription during cellular response to zinc

References:

Genes:

Genotypes:

FYPO:0004009 - decreased rRNA transcription

References:

Genes:

Genotypes:

FYPO:0003598 - decreased snRNA 3'-end processing

References:

Genes:

Genotypes:

FYPO:0006613 - decreased termination of RNA polymerase II transcription

References:

Genes:

Genotypes:

FYPO:0002876 - decreased transcription

References:

Genes:

Genotypes:

FYPO:0002894 - decreased transcription during cellular response to calcium ion

References:

Genes:

Genotypes:

FYPO:0006676 - decreased transcription during cellular response to hydroxyurea

References:

Genes:

Genotypes:

FYPO:0003120 - decreased transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0001852 - decreased transcription during iron starvation

References:

Genes:

Genotypes:

FYPO:0006544 - decreased transcription during mitosis

References:

Genes:

Genotypes:

FYPO:0005118 - decreased transcription during nitrogen starvation

References:

Genes:

Genotypes:

FYPO:0000781 - decreased transcription during vegetative growth

References:

Genes:

Genotypes:

FYPO:0004452 - decreased transcription from CDRE promoter in response to calcium ion

References:

Genes:

Genotypes:

FYPO:0004480 - decreased transcription from CDRE promoter in response to micafungin

References:

Genes:

Genotypes:

FYPO:0004479 - decreased transcription from CDRE promoter in response to salt stress

References:

Genes:

Genotypes:

FYPO:0005496 - decreased transcription from CRE promoter

References:

Genes:

Genotypes:

FYPO:0005499 - decreased transcription from CRE promoter during cellular response to miconazole

References:

Genes:

Genotypes:

FYPO:0005318 - decreased transcription from MCB promoter

References:

Genes:

Genotypes:

FYPO:0005229 - decreased transcription from RNA polymerase II promoter during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003251 - decreased transcription from SRE promoter

References:

Genes:

Genotypes:

FYPO:0007613 - decreased transcription from STREP promoter

References:

Genes:

Genotypes:

FYPO:0006473 - decreased transcription of amino acid biosynthesis genes in response to amino acid starvation

References:

Genes:

Genotypes:

FYPO:0003770 - decreased transcriptional response to pheromone

References:

Genes:

Genotypes:

FYPO:0001798 - decreased translation

References:

Genes:

Genotypes:

FYPO:0003722 - decreased tRNA 5'-leader removal

References:

Genes:

Genotypes:

FYPO:0008394 - decreased tRNA splicing

References:

Genes:

Genotypes:

FYPO:0006355 - delayed onset of transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0001555 - formation of abnormal tRNA processing intermediates

References:

Genes:

Genotypes:

FYPO:0000288 - gene expression regulation phenotype

References:

Genes:

Genotypes:

FYPO:0002913 - increased antisense RNA transcription

References:

Genes:

Genotypes:

FYPO:0004540 - increased chromatin silencing

References:

Genes:

Genotypes:

FYPO:0005071 - increased chromatin silencing at centromere

References:

Genes:

Genotypes:

FYPO:0005315 - increased chromatin silencing at centromere central core

References:

Genes:

Genotypes:

FYPO:0004541 - increased chromatin silencing at centromere inner repeat

References:

Genes:

Genotypes:

FYPO:0006994 - increased chromatin silencing at centromere otr1L

References:

Genes:

Genotypes:

FYPO:0006299 - increased chromatin silencing at centromere outer repeat

References:

Genes:

Genotypes:

FYPO:0007599 - increased chromatin silencing at ectopic tethering site

References:

Genes:

Genotypes:

FYPO:0006079 - increased chromatin silencing at rDNA

References:

Genes:

Genotypes:

FYPO:0004376 - increased chromatin silencing at silent mating-type cassette

References:

Genes:

Genotypes:

FYPO:0004542 - increased chromatin silencing at subtelomere

References:

Genes:

Genotypes:

FYPO:0006520 - increased cytoplasmic translation

References:

Genes:

Genotypes:

FYPO:0008413 - increased establishment of chromatin silencing at centromere outer repeat region

References:

Genes:

Genotypes:

FYPO:0006548 - increased gene expression

References:

Genes:

Genotypes:

FYPO:0000577 - increased gene silencing

References:

Genes:

Genotypes:

FYPO:0002914 - increased intergenic transcription

References:

Genes:

Genotypes:

FYPO:0006296 - increased negative regulation of transcription by glucose

References:

Genes:

Genotypes:

FYPO:0007091 - increased negative regulation of transcription by zinc

References:

Genes:

Genotypes:

FYPO:0006070 - increased small RNA 3' adenylation

References:

Genes:

Genotypes:

FYPO:0008068 - increased spatial extent of chromatin silencing at silent mating-type cassette

References:

Genes:

Genotypes:

FYPO:0008130 - increased stop codon readthrough

References:

Genes:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

References:

Genes:

Genotypes:

FYPO:0006614 - increased termination of RNA polymerase II transcription

References:

Genes:

Genotypes:

FYPO:0002875 - increased transcription

References:

Genes:

Genotypes:

FYPO:0007421 - increased transcription at telomere during G0

References:

Genes:

Genotypes:

FYPO:0002908 - increased transcription at telomere during vegetative growth

References:

Genes:

Genotypes:

FYPO:0002895 - increased transcription during cellular response to calcium ion

References:

Genes:

Genotypes:

FYPO:0001854 - increased transcription during cellular response to iron

References:

Genes:

Genotypes:

FYPO:0002878 - increased transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0005661 - increased transcription during nitrogen starvation

References:

Genes:

Genotypes:

FYPO:0000780 - increased transcription during vegetative growth

References:

Genes:

Genotypes:

FYPO:0001460 - increased transcription from CDRE promoter in response to calcium ion

References:

Genes:

Genotypes:

FYPO:0005495 - increased transcription from CRE promoter

References:

Genes:

Genotypes:

FYPO:0005498 - increased transcription from CRE promoter during cellular response to miconazole

References:

Genes:

Genotypes:

FYPO:0005886 - increased transcription from HSE promoter

References:

Genes:

Genotypes:

FYPO:0000239 - increased transcription from MCB promoter

References:

Genes:

Genotypes:

FYPO:0007297 - increased transcription from SRE promoter

References:

Genes:

Genotypes:

FYPO:0007612 - increased transcription from STREP promoter

References:

Genes:

Genotypes:

FYPO:0007615 - increased transcription from STREP promoter during cellular response to nitric oxide

References:

Genes:

Genotypes:

FYPO:0005662 - increased transcription from TR box

References:

Genes:

Genotypes:

FYPO:0004565 - increased transcription of pheromone response gene mRNA during vegetative growth

References:

Genes:

Genotypes:

FYPO:0004581 - increased transcriptional response to pheromone

References:

Genes:

Genotypes:

FYPO:0005993 - normal cytoplasmic translation

References:

Genes:

Genotypes:

FYPO:0006038 - normal cytoplasmic translational initiation

References:

Genes:

Genotypes:

FYPO:0005994 - normal mRNA deadenylation

References:

Genes:

Genotypes:

FYPO:0001865 - normal negative regulation of transcription by glucose

References:

Genes:

Genotypes:

FYPO:0005214 - normal regulation of translation in response to osmotic stress

References:

Genes:

Genotypes:

FYPO:0005230 - normal regulation of translation in response to UV

References:

Genes:

Genotypes:

FYPO:0004235 - normal RNA level oscillation during mitotic cell cycle

References:

Genes:

Genotypes:

FYPO:0001980 - normal RNA processing

References:

Genes:

Genotypes:

FYPO:0004008 - normal rRNA transcription

References:

Genes:

Genotypes:

FYPO:0003469 - normal snRNA splicing

References:

Genes:

Genotypes:

FYPO:0006279 - normal termination of RNA polymerase II transcription

References:

Genes:

Genotypes:

FYPO:0005359 - normal termination of RNA polymerase II transcription at RTS1 barrier

References:

Genes:

Genotypes:

FYPO:0007008 - normal termination of RNA polymerase III transcription

References:

Genes:

Genotypes:

FYPO:0002896 - normal transcription during cellular response to calcium ion

References:

Genes:

Genotypes:

FYPO:0005740 - normal transcription during cellular response to heat

References:

Genes:

Genotypes:

FYPO:0006762 - normal transcription during cellular response to hydroxyurea

References:

Genes:

Genotypes:

FYPO:0001857 - normal transcription during cellular response to iron

References:

Genes:

Genotypes:

FYPO:0003036 - normal transcription during cellular response to UV

References:

Genes:

Genotypes:

FYPO:0002883 - normal transcription during glucose starvation

References:

Genes:

Genotypes:

FYPO:0001856 - normal transcription during iron starvation

References:

Genes:

Genotypes:

FYPO:0005117 - normal transcription during nitrogen starvation

References:

Genes:

Genotypes:

FYPO:0001855 - normal transcription during vegetative growth

References:

Genes:

Genotypes:

FYPO:0006742 - normal transcription from MCB promoter

References:

Genes:

Genotypes:

FYPO:0007614 - normal transcription from STREP promoter

References:

Genes:

Genotypes:

FYPO:0003956 - UAA suppression

References:

Genes:

Genotypes:

FYPO:0003911 - UGA suppression

References:

Genes:

Genotypes: