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Phenotype ontology term - FYPO:0000294 - RNA metabolism phenotype

Term summary

ID
FYPO:0000294
Name
RNA metabolism phenotype
Ontology or CV name
Phenotype
Definition
A cellular process phenotype that affects any RNA metabolic process.

Parents

Annotation

Multi-locus phenotype

FYPO:0004065 - abnormal transcription elongation from RNA polymerase II promoter

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FYPO:0008339 - abolished 3' end uridylation of non-polyadenylated RNA

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FYPO:0008336 - abolished mRNA poly(A) tail uridylation

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FYPO:0003602 - abolished mRNA splicing, via spliceosome

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FYPO:0002879 - abolished transcription during glucose starvation

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FYPO:0006148 - abolished transcription during nitrogen starvation

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FYPO:0001768 - abolished tRNA-Asp C38 methylation

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FYPO:0003467 - altered splice site specificity

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FYPO:0008332 - decreased mRNA poly(A) tail uridylation

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FYPO:0003029 - decreased mRNA splicing, via spliceosome

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FYPO:0003244 - decreased mRNA splicing, via spliceosome, intron-specific

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FYPO:0004009 - decreased rRNA transcription

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FYPO:0008118 - decreased splicing of introns with branch point-distant 3’-splice site

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FYPO:0002876 - decreased transcription

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FYPO:0003120 - decreased transcription during glucose starvation

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FYPO:0006544 - decreased transcription during mitosis

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FYPO:0005118 - decreased transcription during nitrogen starvation

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FYPO:0003251 - decreased transcription from SRE promoter

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FYPO:0006251 - decreased tRNA aminoacylation

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FYPO:0006355 - delayed onset of transcription during glucose starvation

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FYPO:0008338 - increased 3' end uridylation of non-polyadenylated RNA

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FYPO:0002913 - increased antisense RNA transcription

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FYPO:0008113 - increased intron retention

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FYPO:0005917 - increased subtelomeric heterochromatin RNA level

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FYPO:0007421 - increased transcription at telomere during G0

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FYPO:0002908 - increased transcription at telomere during vegetative growth

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FYPO:0007787 - increased transcription during cell cycle arrest at meiotic G2/MI transition

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FYPO:0002895 - increased transcription during cellular response to calcium ion

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FYPO:0001854 - increased transcription during cellular response to iron

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FYPO:0002878 - increased transcription during glucose starvation

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FYPO:0000780 - increased transcription during vegetative growth

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FYPO:0000239 - increased transcription from MCB promoter

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FYPO:0007615 - increased transcription from STREP promoter during cellular response to nitric oxide

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FYPO:0003468 - normal RNA splicing

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FYPO:0006279 - normal termination of RNA polymerase II transcription

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FYPO:0006742 - normal transcription from MCB promoter

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Single locus phenotype

FYPO:0000189 - abnormal mRNA splicing, via spliceosome

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FYPO:0004851 - abnormal RNA metabolic process

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FYPO:0005981 - abnormal termination of RNA polymerase I transcription

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FYPO:0004811 - abnormal termination of RNA polymerase II transcription

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FYPO:0004814 - abnormal termination of RNA polymerase II transcription at highly transcribed protein-coding genes

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FYPO:0004812 - abnormal termination of RNA polymerase II transcription at rDNA

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FYPO:0004813 - abnormal termination of RNA polymerase II transcription at tDNA

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FYPO:0006983 - abnormal termination of RNA polymerase III transcription

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FYPO:0004065 - abnormal transcription elongation from RNA polymerase II promoter

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FYPO:0003556 - abnormal transcription termination

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FYPO:0001766 - abnormal tRNA methylation

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FYPO:0008450 - abnormal tRNA modification at postion A37

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FYPO:0008451 - abnormal tRNA modification at postion A58

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FYPO:0008449 - abnormal tRNA modification at postion U34

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FYPO:0005016 - abolished 18S rRNA acetylation

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FYPO:0001173 - abolished 7-methylguanosine cap hypermethylation

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FYPO:0002041 - abolished deadenylation-independent decapping of nuclear-transcribed mRNA

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FYPO:0003602 - abolished mRNA splicing, via spliceosome

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FYPO:0003918 - abolished nonsense-mediated decay

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FYPO:0002879 - abolished transcription during glucose starvation

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FYPO:0001853 - abolished transcription during iron starvation

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FYPO:0004986 - abolished transcription during meiotic cell cycle

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FYPO:0006148 - abolished transcription during nitrogen starvation

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FYPO:0001443 - abolished transcription during vegetative growth

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FYPO:0005497 - abolished transcription from CRE promoter

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FYPO:0005500 - abolished transcription from CRE promoter during cellular response to miconazole

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FYPO:0003796 - abolished transcription from RNA polymerase II promoter

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FYPO:0008345 - abolished tRNA cytidine N4-acetylation

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FYPO:0007021 - abolished tRNA cytosine 2'-O-methylation

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FYPO:0007022 - abolished tRNA guanosine 2'-O-methylation

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FYPO:0007609 - abolished tRNA guanosine 7-methylation

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FYPO:0003957 - abolished tRNA guanosine N2,N2-dimethylation

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FYPO:0003218 - abolished tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis

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FYPO:0005177 - abolished tRNA wobble position uridine thiolation

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FYPO:0001768 - abolished tRNA-Asp C38 methylation

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FYPO:0003622 - abolished U6 2'-O-snRNA methylation at residue A41

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FYPO:0008109 - abolished U6 2'-O-snRNA methylation at residue A64

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FYPO:0003467 - altered splice site specificity

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FYPO:0008337 - decreased 3' end uridylation of non-polyadenylated RNA

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FYPO:0007883 - decreased cleavage-dependent termination of RNA polymerase II transcription

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FYPO:0002039 - decreased deadenylation-independent decapping of nuclear-transcribed mRNA

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FYPO:0008332 - decreased mRNA poly(A) tail uridylation

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FYPO:0008147 - decreased mRNA splicing, meiotic genes

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FYPO:0003029 - decreased mRNA splicing, via spliceosome

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FYPO:0003244 - decreased mRNA splicing, via spliceosome, intron-specific

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FYPO:0003917 - decreased nonsense-mediated decay

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FYPO:0006809 - decreased nuclear-transcribed mRNA poly(A) tail shortening

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FYPO:0002833 - decreased polyuridylation-dependent decapping of nuclear-transcribed mRNA

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FYPO:0008037 - decreased rate of transcription elongation from RNA polymerase II promoter

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FYPO:0003040 - decreased RNA splicing, via splicosome

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FYPO:0004009 - decreased rRNA transcription

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FYPO:0003041 - decreased snRNA splicing

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FYPO:0008118 - decreased splicing of introns with branch point-distant 3’-splice site

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FYPO:0003243 - decreased splicing of long introns

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FYPO:0003242 - decreased splicing of mRNA introns with low A/U content

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FYPO:0003030 - decreased splicing of mRNA introns with low A/U content and polypyrimidine tracts distal to branch site

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FYPO:0007199 - decreased splicing of mRNA introns with nonconsensus cis-splicing sequences

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FYPO:0006613 - decreased termination of RNA polymerase II transcription

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FYPO:0002876 - decreased transcription

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FYPO:0002894 - decreased transcription during cellular response to calcium ion

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FYPO:0006676 - decreased transcription during cellular response to hydroxyurea

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FYPO:0003120 - decreased transcription during glucose starvation

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FYPO:0001852 - decreased transcription during iron starvation

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FYPO:0006544 - decreased transcription during mitosis

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FYPO:0005118 - decreased transcription during nitrogen starvation

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FYPO:0000781 - decreased transcription during vegetative growth

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FYPO:0004452 - decreased transcription from CDRE promoter in response to calcium ion

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FYPO:0004480 - decreased transcription from CDRE promoter in response to micafungin

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FYPO:0004479 - decreased transcription from CDRE promoter in response to salt stress

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FYPO:0005496 - decreased transcription from CRE promoter

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FYPO:0005499 - decreased transcription from CRE promoter during cellular response to miconazole

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FYPO:0005318 - decreased transcription from MCB promoter

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FYPO:0005229 - decreased transcription from RNA polymerase II promoter during vegetative growth

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FYPO:0003251 - decreased transcription from SRE promoter

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FYPO:0007613 - decreased transcription from STREP promoter

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FYPO:0006473 - decreased transcription of amino acid biosynthesis genes in response to amino acid starvation

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FYPO:0006251 - decreased tRNA aminoacylation

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FYPO:0007024 - decreased tRNA guanosine 7-methylation

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FYPO:0007025 - decreased tRNA guanosine N2-methylation

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FYPO:0008394 - decreased tRNA splicing

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FYPO:0007026 - decreased tRNA wybutosine biosynthesis

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FYPO:0008110 - decreased U6 2'-O-snRNA methylation at residue A64

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FYPO:0006355 - delayed onset of transcription during glucose starvation

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FYPO:0003669 - exon skipping

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FYPO:0002906 - increased antisense primary transcript splicing

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FYPO:0002913 - increased antisense RNA transcription

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FYPO:0002040 - increased deadenylation-independent decapping of nuclear-transcribed mRNA

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FYPO:0002914 - increased intergenic transcription

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FYPO:0008113 - increased intron retention

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FYPO:0008335 - increased mRNA poly(A) tail uridylation

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FYPO:0003470 - increased mRNA splicing, via spliceosome

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FYPO:0003237 - increased RNA splicing at cryptic splice sites

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FYPO:0002916 - increased RNA splicing, via spliceosome

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FYPO:0005917 - increased subtelomeric heterochromatin RNA level

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FYPO:0006614 - increased termination of RNA polymerase II transcription

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FYPO:0002875 - increased transcription

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FYPO:0007421 - increased transcription at telomere during G0

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FYPO:0002908 - increased transcription at telomere during vegetative growth

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FYPO:0002895 - increased transcription during cellular response to calcium ion

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FYPO:0001854 - increased transcription during cellular response to iron

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FYPO:0002878 - increased transcription during glucose starvation

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FYPO:0005661 - increased transcription during nitrogen starvation

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FYPO:0000780 - increased transcription during vegetative growth

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FYPO:0001460 - increased transcription from CDRE promoter in response to calcium ion

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FYPO:0005495 - increased transcription from CRE promoter

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FYPO:0005498 - increased transcription from CRE promoter during cellular response to miconazole

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FYPO:0005886 - increased transcription from HSE promoter

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FYPO:0000239 - increased transcription from MCB promoter

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FYPO:0007297 - increased transcription from SRE promoter

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FYPO:0007612 - increased transcription from STREP promoter

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FYPO:0007615 - increased transcription from STREP promoter during cellular response to nitric oxide

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FYPO:0005662 - increased transcription from TR box

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FYPO:0004565 - increased transcription of pheromone response gene mRNA during vegetative growth

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FYPO:0007023 - increased tRNA guanosine 1-methylation

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FYPO:0008129 - increased tRNA guanosine N2,N2-dimethylation

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FYPO:0001769 - increased tRNA-Asp C38 methylation

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FYPO:0005994 - normal mRNA deadenylation

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FYPO:0003947 - normal nonsense-mediated decay

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FYPO:0004008 - normal rRNA transcription

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FYPO:0003469 - normal snRNA splicing

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FYPO:0006279 - normal termination of RNA polymerase II transcription

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FYPO:0005359 - normal termination of RNA polymerase II transcription at RTS1 barrier

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FYPO:0007008 - normal termination of RNA polymerase III transcription

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FYPO:0002896 - normal transcription during cellular response to calcium ion

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FYPO:0005740 - normal transcription during cellular response to heat

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FYPO:0006762 - normal transcription during cellular response to hydroxyurea

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FYPO:0001857 - normal transcription during cellular response to iron

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FYPO:0003036 - normal transcription during cellular response to UV

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FYPO:0002883 - normal transcription during glucose starvation

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FYPO:0001856 - normal transcription during iron starvation

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FYPO:0005117 - normal transcription during nitrogen starvation

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FYPO:0001855 - normal transcription during vegetative growth

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FYPO:0006742 - normal transcription from MCB promoter

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FYPO:0007614 - normal transcription from STREP promoter

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FYPO:0003720 - snoRNA guided rRNA 2'-O-methylation abolished at specific site

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FYPO:0008436 - snoRNA guided rRNA 2'-O-methylation level decreased at specific site

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FYPO:0003699 - snoRNA guided rRNA pseudouridine synthesis abolished at specific site

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