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Phenotype ontology term - FYPO:0001346 - DNA metabolism phenotype during vegetative growth

Term summary

ID
FYPO:0001346
Name
DNA metabolism phenotype during vegetative growth
Ontology or CV name
Phenotype
Definition
A cellular process phenotype that affects any DNA metabolic process in the vegetative growth phase of the life cycle.

Parents

Annotation

Multi-locus phenotype

FYPO:0002553 - abnormal double-strand break processing

References:

Genes:

Genotypes:

FYPO:0000468 - abnormal mating type switching

References:

Genes:

Genotypes:

FYPO:0001343 - abnormal mitotic DNA replication

References:

Genes:

Genotypes:

FYPO:0000481 - abnormal mitotic recombination

References:

Genes:

Genotypes:

FYPO:0000122 - abnormal telomere maintenance during vegetative growth

References:

Genes:

Genotypes:

FYPO:0002254 - abnormal telomere morphology during vegetative growth

References:

Genes:

Genotypes:

FYPO:0006087 - abolished DNA resection during replication fork processing

References:

Genes:

Genotypes:

FYPO:0003485 - abolished DNA synthesis

References:

Genes:

Genotypes:

FYPO:0005399 - abolished double-strand break repair via homologous recombination

References:

Genes:

Genotypes:

FYPO:0000469 - abolished mating type switching

References:

Genes:

Genotypes:

FYPO:0003844 - abolished mitotic chromosome condensation

References:

Genes:

Genotypes:

FYPO:0006728 - abolished mitotic DNA replication initiation

References:

Genes:

Genotypes:

FYPO:0006731 - decreased CMG complex progression from replication origin

References:

Genes:

Genotypes:

FYPO:0006318 - decreased DNA resection during replication fork processing

References:

Genes:

Genotypes:

FYPO:0003660 - decreased double-strand break repair during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003912 - decreased double-strand break repair via homologous recombination

References:

Genes:

Genotypes:

FYPO:0004287 - decreased double-strand break repair via nonhomologous end joining

References:

Genes:

Genotypes:

FYPO:0006921 - decreased gene conversion at mitotic DNA replication fork barriers

References:

Genes:

Genotypes:

FYPO:0000185 - decreased gene conversion during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003081 - decreased genetic imprinting at mating-type locus

References:

Genes:

Genotypes:

FYPO:0000470 - decreased mating type switching

References:

Genes:

Genotypes:

FYPO:0003286 - decreased mitotic chromosome condensation

References:

Genes:

Genotypes:

FYPO:0005424 - decreased mitotic chromosome condensation during telophase

References:

Genes:

Genotypes:

FYPO:0003175 - decreased nucleotide-excision repair during cellular response to UV

References:

Genes:

Genotypes:

FYPO:0003923 - decreased rate of mitotic DNA replication elongation

References:

Genes:

Genotypes:

FYPO:0007532 - decreased replication fork colocalization with nuclear pore complex

References:

Genes:

Genotypes:

FYPO:0007255 - decreased replication fork processing

References:

Genes:

Genotypes:

FYPO:0003589 - decreased replication slippage during replication fork processing

References:

Genes:

Genotypes:

FYPO:0005357 - decreased site-specific DNA replication termination at RTS1 barrier

References:

Genes:

Genotypes:

FYPO:0005786 - decreased spatial extent of double-strand break processing

References:

Genes:

Genotypes:

FYPO:0004031 - decreased UV-damage excision repair

References:

Genes:

Genotypes:

FYPO:0000778 - delayed onset of double-strand break repair

References:

Genes:

Genotypes:

FYPO:0004003 - delayed onset of replication fork processing

References:

Genes:

Genotypes:

FYPO:0002019 - elongated telomeres during vegetative growth

References:

Genes:

Genotypes:

FYPO:0004985 - entangled telomeres during vegetative growth

References:

Genes:

Genotypes:

FYPO:0005432 - globally decreased mitotic recombination

References:

Genes:

Genotypes:

FYPO:0010080 - increased DNA recombination at long terminal repeat region

References:

Genes:

Genotypes:

FYPO:0000167 - increased DNA recombination at mitotic DNA replication fork barriers

References:

Genes:

Genotypes:

FYPO:0004251 - increased DNA resection during replication fork processing

References:

Genes:

Genotypes:

FYPO:0003584 - increased double-strand break repair via nonhomologous end joining

References:

Genes:

Genotypes:

FYPO:0000473 - increased mitotic recombination

References:

Genes:

Genotypes:

FYPO:0005868 - increased mitotic recombination at rDNA

References:

Genes:

Genotypes:

FYPO:0006280 - increased mitotic recombination with crossover formation at centromere

References:

Genes:

Genotypes:

FYPO:0004599 - increased rate of DNA replication during vegetative growth

References:

Genes:

Genotypes:

FYPO:0007814 - increased rate of mitotic DNA replication elongation during cellular response to hydroxyurea

References:

Genes:

Genotypes:

FYPO:0010016 - increased replication fork stalling during cellular response to DNA damage

References:

Genes:

Genotypes:

FYPO:0005031 - increased ribonucleotide incorporation on lagging strand

References:

Genes:

Genotypes:

FYPO:0005030 - increased ribonucleotide incorporation on leading strand

References:

Genes:

Genotypes:

FYPO:0005402 - increased telomeric 3' overhang length during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003587 - loss of gross chromosomal rearrangement during replication fork processing

References:

Genes:

Genotypes:

FYPO:0002905 - normal telomere maintenance

References:

Genes:

Genotypes:

FYPO:0003498 - premature mitotic DNA replication initiation

References:

Genes:

Genotypes:

FYPO:0006272 - premature mitotic DNA replication initiation from late origin

References:

Genes:

Genotypes:

FYPO:0003107 - progressively shortening telomeres during vegetative growth

References:

Genes:

Genotypes:

FYPO:0002239 - shortened telomeres during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003106 - stable shortened telomeres during vegetative growth

References:

Genes:

Genotypes:

FYPO:0005403 - telomeric 3' overhang absent during vegetative growth

References:

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Genotypes:

Single locus phenotype

FYPO:0000188 - abnormal DNA repair during vegetative growth

References:

Genes:

Genotypes:

FYPO:0002553 - abnormal double-strand break processing

References:

Genes:

Genotypes:

FYPO:0000777 - abnormal double-strand break repair during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003661 - abnormal double-strand break repair via nonhomologous end joining

References:

Genes:

Genotypes:

FYPO:0000468 - abnormal mating type switching

References:

Genes:

Genotypes:

FYPO:0003659 - abnormal mating type switching resulting in duplication or deletion in mating-type region

References:

Genes:

Genotypes:

FYPO:0001343 - abnormal mitotic DNA replication

References:

Genes:

Genotypes:

FYPO:0001344 - abnormal mitotic DNA replication initiation

References:

Genes:

Genotypes:

FYPO:0004844 - abnormal mitotic DNA replication lagging strand elongation

References:

Genes:

Genotypes:

FYPO:0004845 - abnormal mitotic DNA replication lagging strand elongation at telomere

References:

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Genotypes:

FYPO:0000481 - abnormal mitotic recombination

References:

Genes:

Genotypes:

FYPO:0003088 - abnormal replication fork arrest

References:

Genes:

Genotypes:

FYPO:0003586 - abnormal replication fork processing

References:

Genes:

Genotypes:

FYPO:0006464 - abnormal telomere length during vegetative growth

References:

Genes:

Genotypes:

FYPO:0000122 - abnormal telomere maintenance during vegetative growth

References:

Genes:

Genotypes:

FYPO:0002254 - abnormal telomere morphology during vegetative growth

References:

Genes:

Genotypes:

FYPO:0000181 - abolished crossover

References:

Genes:

Genotypes:

FYPO:0006087 - abolished DNA resection during replication fork processing

References:

Genes:

Genotypes:

FYPO:0003485 - abolished DNA synthesis

References:

Genes:

Genotypes:

FYPO:0005436 - abolished double-strand break repair

References:

Genes:

Genotypes:

FYPO:0005399 - abolished double-strand break repair via homologous recombination

References:

Genes:

Genotypes:

FYPO:0005459 - abolished double-strand break repair via nonhomologous end joining

References:

Genes:

Genotypes:

FYPO:0003080 - abolished genetic imprinting at mating-type locus

References:

Genes:

Genotypes:

FYPO:0000469 - abolished mating type switching

References:

Genes:

Genotypes:

FYPO:0003844 - abolished mitotic chromosome condensation

References:

Genes:

Genotypes:

FYPO:0006727 - abolished mitotic DNA replication elongation

References:

Genes:

Genotypes:

FYPO:0006728 - abolished mitotic DNA replication initiation

References:

Genes:

Genotypes:

FYPO:0010026 - abolished mitotic recombination at centromere

References:

Genes:

Genotypes:

FYPO:0005356 - abolished site-specific DNA replication termination at RTS1 barrier

References:

Genes:

Genotypes:

FYPO:0003928 - altered double-strand break repair junction in presence of persistent double-strand breaks

References:

Genes:

Genotypes:

FYPO:0006731 - decreased CMG complex progression from replication origin

References:

Genes:

Genotypes:

FYPO:0003352 - decreased DNA double-strand break formation at mating-type locus

References:

Genes:

Genotypes:

FYPO:0006920 - decreased DNA recombination at mitotic DNA replication fork barriers

References:

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Genotypes:

FYPO:0007005 - decreased DNA recombination downstream of mitotic DNA replication fork barriers

References:

Genes:

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FYPO:0002340 - decreased DNA recombination during vegetative growth

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Genotypes:

FYPO:0006318 - decreased DNA resection during replication fork processing

References:

Genes:

Genotypes:

FYPO:0005159 - decreased DNA synthesis involved in mitotic DNA replication

References:

Genes:

Genotypes:

FYPO:0003660 - decreased double-strand break repair during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003912 - decreased double-strand break repair via homologous recombination

References:

Genes:

Genotypes:

FYPO:0004287 - decreased double-strand break repair via nonhomologous end joining

References:

Genes:

Genotypes:

FYPO:0005370 - decreased fidelity of double-strand break repair via nonhomologous end joining

References:

Genes:

Genotypes:

FYPO:0006921 - decreased gene conversion at mitotic DNA replication fork barriers

References:

Genes:

Genotypes:

FYPO:0000185 - decreased gene conversion during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003081 - decreased genetic imprinting at mating-type locus

References:

Genes:

Genotypes:

FYPO:0000470 - decreased mating type switching

References:

Genes:

Genotypes:

FYPO:0003286 - decreased mitotic chromosome condensation

References:

Genes:

Genotypes:

FYPO:0006860 - decreased mitotic DNA replication at rDNA

References:

Genes:

Genotypes:

FYPO:0006859 - decreased mitotic DNA replication at telomere

References:

Genes:

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FYPO:0004475 - decreased mitotic DNA replication initiation

References:

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Genotypes:

FYPO:0000482 - decreased mitotic recombination

References:

Genes:

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FYPO:0006281 - decreased mitotic recombination at centromere

References:

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Genotypes:

FYPO:0006282 - decreased mitotic recombination at chromosome arms

References:

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FYPO:0005431 - decreased mitotic recombination at hotspot

References:

Genes:

Genotypes:

FYPO:0003175 - decreased nucleotide-excision repair during cellular response to UV

References:

Genes:

Genotypes:

FYPO:0001982 - decreased rate of DNA replication during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003923 - decreased rate of mitotic DNA replication elongation

References:

Genes:

Genotypes:

FYPO:0003925 - decreased rate of mitotic DNA replication elongation at highly transcribed RNA polymerase II genes

References:

Genes:

Genotypes:

FYPO:0006240 - decreased rate of mitotic DNA replication elongation during cellular response to DNA damage

References:

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Genotypes:

FYPO:0006603 - decreased replication fork arrest at RTS1 barrier

References:

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FYPO:0006604 - decreased replication fork arrest at tRNA locus

References:

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FYPO:0007532 - decreased replication fork colocalization with nuclear pore complex

References:

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Genotypes:

FYPO:0007255 - decreased replication fork processing

References:

Genes:

Genotypes:

FYPO:0006242 - decreased replication fork stalling during cellular response to DNA damage

References:

Genes:

Genotypes:

FYPO:0003589 - decreased replication slippage during replication fork processing

References:

Genes:

Genotypes:

FYPO:0005357 - decreased site-specific DNA replication termination at RTS1 barrier

References:

Genes:

Genotypes:

FYPO:0005786 - decreased spatial extent of double-strand break processing

References:

Genes:

Genotypes:

FYPO:0004031 - decreased UV-damage excision repair

References:

Genes:

Genotypes:

FYPO:0004061 - decreased UV-damage excision repair during mitotic G1 phase

References:

Genes:

Genotypes:

FYPO:0005429 - decreased UV-damage excision repair during mitotic G2 phase

References:

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Genotypes:

FYPO:0000778 - delayed onset of double-strand break repair

References:

Genes:

Genotypes:

FYPO:0006031 - delayed onset of mitotic DNA replication initiation

References:

Genes:

Genotypes:

FYPO:0007233 - delayed onset of mitotic DNA replication initiation from early origin

References:

Genes:

Genotypes:

FYPO:0004003 - delayed onset of replication fork processing

References:

Genes:

Genotypes:

FYPO:0005428 - delayed onset of UV-damage excision repair

References:

Genes:

Genotypes:

FYPO:0002019 - elongated telomeres during vegetative growth

References:

Genes:

Genotypes:

FYPO:0005432 - globally decreased mitotic recombination

References:

Genes:

Genotypes:

FYPO:0010080 - increased DNA recombination at long terminal repeat region

References:

Genes:

Genotypes:

FYPO:0000167 - increased DNA recombination at mitotic DNA replication fork barriers

References:

Genes:

Genotypes:

FYPO:0005405 - increased DNA recombination at telomere during vegetative growth

References:

Genes:

Genotypes:

FYPO:0007006 - increased DNA recombination downstream of mitotic DNA replication fork barriers

References:

Genes:

Genotypes:

FYPO:0005391 - increased DNA recombination during cellular response to ionizing radiation

References:

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Genotypes:

FYPO:0004251 - increased DNA resection during replication fork processing

References:

Genes:

Genotypes:

FYPO:0003584 - increased double-strand break repair via nonhomologous end joining

References:

Genes:

Genotypes:

FYPO:0007455 - increased double-strand break repair via single-strand annealing

References:

Genes:

Genotypes:

FYPO:0010021 - increased duration of double-strand break repair via homologous recombination

References:

Genes:

Genotypes:

FYPO:0003662 - increased error-free double-strand break repair

References:

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Genotypes:

FYPO:0005788 - increased gene conversion during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003588 - increased gross chromosomal rearrangement during replication fork processing

References:

Genes:

Genotypes:

FYPO:0000199 - increased long tract gene conversion

References:

Genes:

Genotypes:

FYPO:0000471 - increased mating type switching

References:

Genes:

Genotypes:

FYPO:0006400 - increased mitotic DNA replication initiation from inefficient origin

References:

Genes:

Genotypes:

FYPO:0000473 - increased mitotic recombination

References:

Genes:

Genotypes:

FYPO:0010024 - increased mitotic recombination at centromere

References:

Genes:

Genotypes:

FYPO:0005868 - increased mitotic recombination at rDNA

References:

Genes:

Genotypes:

FYPO:0006280 - increased mitotic recombination with crossover formation at centromere

References:

Genes:

Genotypes:

FYPO:0006086 - increased mitotic sister chromatid bridge formation during replication fork processing

References:

Genes:

Genotypes:

FYPO:0007814 - increased rate of mitotic DNA replication elongation during cellular response to hydroxyurea

References:

Genes:

Genotypes:

FYPO:0007679 - increased replication fork arrest at RTS1 barrier

References:

Genes:

Genotypes:

FYPO:0003922 - increased replication fork arrest at tRNA locus

References:

Genes:

Genotypes:

FYPO:0005764 - increased replication fork pausing at G4 motif

References:

Genes:

Genotypes:

FYPO:0005765 - increased replication fork pausing at highly transcribed RNA polymerase II genes

References:

Genes:

Genotypes:

FYPO:0005766 - increased replication fork pausing at nucleosome-depleted regions

References:

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Genotypes:

FYPO:0005768 - increased replication fork pausing at rDNA

References:

Genes:

Genotypes:

FYPO:0005767 - increased replication fork pausing at tRNA genes

References:

Genes:

Genotypes:

FYPO:0010016 - increased replication fork stalling during cellular response to DNA damage

References:

Genes:

Genotypes:

FYPO:0007537 - increased replication slippage during replication fork processing

References:

Genes:

Genotypes:

FYPO:0007680 - increased ribonucleotide incorporation into DNA

References:

Genes:

Genotypes:

FYPO:0005031 - increased ribonucleotide incorporation on lagging strand

References:

Genes:

Genotypes:

FYPO:0005030 - increased ribonucleotide incorporation on leading strand

References:

Genes:

Genotypes:

FYPO:0005358 - increased site-specific DNA replication termination at RTS1 barrier

References:

Genes:

Genotypes:

FYPO:0005402 - increased telomeric 3' overhang length during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003587 - loss of gross chromosomal rearrangement during replication fork processing

References:

Genes:

Genotypes:

FYPO:0004026 - loss of template switch-mediated chromosomal rearrangement during replication fork processing

References:

Genes:

Genotypes:

FYPO:0004099 - normal mitotic chromosome condensation

References:

Genes:

Genotypes:

FYPO:0007205 - normal replication fork arrest at rDNA repeats

References:

Genes:

Genotypes:

FYPO:0007533 - normal replication fork colocalization with nuclear pore complex

References:

Genes:

Genotypes:

FYPO:0007254 - normal replication fork processing

References:

Genes:

Genotypes:

FYPO:0002905 - normal telomere maintenance

References:

Genes:

Genotypes:

FYPO:0003498 - premature mitotic DNA replication initiation

References:

Genes:

Genotypes:

FYPO:0006272 - premature mitotic DNA replication initiation from late origin

References:

Genes:

Genotypes:

FYPO:0003107 - progressively shortening telomeres during vegetative growth

References:

Genes:

Genotypes:

FYPO:0002239 - shortened telomeres during vegetative growth

References:

Genes:

Genotypes:

FYPO:0003106 - stable shortened telomeres during vegetative growth

References:

Genes:

Genotypes: