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Phenotype ontology term - FYPO:0006551 - abnormal gene expression

Term summary

ID
FYPO:0006551
Name
abnormal gene expression
Ontology or CV name
Phenotype
Definition
A cellular process phenotype in which gene expression is abnormal. One or more parts of gene expression, such as transcription or translation, may be affected, and all genes, or a specific subset of genes, may be affected.

Parents

Annotation

Multi-locus phenotype

FYPO:0007409 - abnormal mRNA alternative polyadenylation

References:

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FYPO:0000204 - abnormal mRNA export from nucleus

References:

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FYPO:0004988 - abnormal RNA level oscillation during mitotic cell cycle

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FYPO:0003596 - abnormal snRNA 3'-end processing

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FYPO:0007334 - abolished chromatin silencing at centromere outer repeat

References:

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FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

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FYPO:0002879 - abolished transcription during glucose starvation

References:

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FYPO:0006148 - abolished transcription during nitrogen starvation

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FYPO:0002353 - decreased chromatin silencing

References:

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FYPO:0002834 - decreased chromatin silencing at centromere

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FYPO:0003217 - decreased chromatin silencing at centromere central core

References:

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FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

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FYPO:0006993 - decreased chromatin silencing at centromere otr1R

References:

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

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FYPO:0007212 - decreased chromatin silencing at heterochromatin island

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FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0004604 - decreased chromatin silencing at subtelomere

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FYPO:0007009 - decreased heterochromatin assembly by small RNA

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FYPO:0002522 - decreased poly(A)+ mRNA export from nucleus

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FYPO:0004009 - decreased rRNA transcription

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FYPO:0002876 - decreased transcription

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FYPO:0003120 - decreased transcription during glucose starvation

References:

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FYPO:0006544 - decreased transcription during mitosis

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FYPO:0005118 - decreased transcription during nitrogen starvation

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FYPO:0003251 - decreased transcription from SRE promoter

References:

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FYPO:0001798 - decreased translation

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FYPO:0004010 - decreased translation of ribosomal proteins during vegetative growth

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FYPO:0006355 - delayed onset of transcription during glucose starvation

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FYPO:0002913 - increased antisense RNA transcription

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FYPO:0004540 - increased chromatin silencing

References:

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FYPO:0005315 - increased chromatin silencing at centromere central core

References:

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FYPO:0006994 - increased chromatin silencing at centromere otr1L

References:

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FYPO:0006299 - increased chromatin silencing at centromere outer repeat

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FYPO:0006079 - increased chromatin silencing at rDNA

References:

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FYPO:0004376 - increased chromatin silencing at silent mating-type cassette

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Genotypes:

FYPO:0004542 - increased chromatin silencing at subtelomere

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FYPO:0006548 - increased gene expression

References:

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Genotypes:

FYPO:0000577 - increased gene silencing

References:

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FYPO:0005917 - increased subtelomeric heterochromatin RNA level

References:

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FYPO:0007421 - increased transcription at telomere during G0

References:

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FYPO:0002908 - increased transcription at telomere during vegetative growth

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FYPO:0007787 - increased transcription during cell cycle arrest at meiotic G2/MI transition

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FYPO:0002895 - increased transcription during cellular response to calcium ion

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FYPO:0001854 - increased transcription during cellular response to iron

References:

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FYPO:0002878 - increased transcription during glucose starvation

References:

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FYPO:0000780 - increased transcription during vegetative growth

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FYPO:0000239 - increased transcription from MCB promoter

References:

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FYPO:0007615 - increased transcription from STREP promoter during cellular response to nitric oxide

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FYPO:0003911 - UGA suppression

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Single locus phenotype

FYPO:0006298 - abnormal 5.8S rRNA 3'-end processing

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FYPO:0003686 - abnormal box C/D snoRNA 3'-end processing

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FYPO:0000146 - abnormal chromatin silencing at centromere

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FYPO:0000640 - abnormal chromatin silencing at centromere central core

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FYPO:0002346 - abnormal chromatin silencing at centromere outer repeat

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FYPO:0000206 - abnormal chromatin silencing at rDNA

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FYPO:0000156 - abnormal chromatin silencing at silent mating-type cassette

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FYPO:0000169 - abnormal chromatin silencing at subtelomere

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FYPO:0003124 - abnormal cytosolic translation

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FYPO:0000187 - abnormal heterochromatin assembly by small RNA

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FYPO:0007409 - abnormal mRNA alternative polyadenylation

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FYPO:0000204 - abnormal mRNA export from nucleus

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FYPO:0000183 - abnormal poly(A)+ mRNA export from nucleus

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FYPO:0004527 - abnormal regulation of transcription during vegetative growth

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FYPO:0006474 - abnormal regulation of translation in response to amino acid starvation

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FYPO:0005043 - abnormal regulation of translation in response to UV

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FYPO:0008155 - abnormal regulatory lncRNA 3'-end processing

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FYPO:0005909 - abnormal RNA 3'-end processing during cellular response to endoplasmic reticulum stress

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FYPO:0004492 - abnormal RNA 5'-end processing

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FYPO:0004988 - abnormal RNA level oscillation during mitotic cell cycle

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FYPO:0003596 - abnormal snRNA 3'-end processing

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FYPO:0004811 - abnormal termination of RNA polymerase II transcription

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FYPO:0004814 - abnormal termination of RNA polymerase II transcription at highly transcribed protein-coding genes

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FYPO:0004812 - abnormal termination of RNA polymerase II transcription at rDNA

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FYPO:0004813 - abnormal termination of RNA polymerase II transcription at tDNA

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FYPO:0006444 - abnormal transcriptional response to amino acid starvation

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FYPO:0001797 - abnormal translation

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FYPO:0001554 - abnormal tRNA processing

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FYPO:0007335 - abolished chromatin silencing at centromere inner repeat

References:

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FYPO:0007334 - abolished chromatin silencing at centromere outer repeat

References:

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FYPO:0007598 - abolished chromatin silencing at ectopic tethering site

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FYPO:0007336 - abolished chromatin silencing at silent mating-type cassette

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FYPO:0006411 - abolished histone RNA level oscillation during mitotic cell cycle

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FYPO:0004530 - abolished mitochondrial translation

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FYPO:0003918 - abolished nonsense-mediated decay

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FYPO:0003597 - abolished snRNA 3'-end processing

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FYPO:0002879 - abolished transcription during glucose starvation

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FYPO:0001853 - abolished transcription during iron starvation

References:

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FYPO:0004986 - abolished transcription during meiotic cell cycle

References:

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FYPO:0006148 - abolished transcription during nitrogen starvation

References:

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FYPO:0001443 - abolished transcription during vegetative growth

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FYPO:0005497 - abolished transcription from CRE promoter

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FYPO:0005500 - abolished transcription from CRE promoter during cellular response to miconazole

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FYPO:0003796 - abolished transcription from RNA polymerase II promoter

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FYPO:0003655 - abolished tRNA splicing

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FYPO:0007481 - attenuated increase in transcription during cellular response to stress in presence of small molecule

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FYPO:0004418 - cut cell with decreased poly(A)+ mRNA export from nucleus

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FYPO:0002353 - decreased chromatin silencing

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FYPO:0002834 - decreased chromatin silencing at centromere

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FYPO:0003217 - decreased chromatin silencing at centromere central core

References:

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FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

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FYPO:0006993 - decreased chromatin silencing at centromere otr1R

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FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

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FYPO:0008454 - decreased chromatin silencing at ectopic tethering site

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FYPO:0007212 - decreased chromatin silencing at heterochromatin island

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FYPO:0003216 - decreased chromatin silencing at rDNA

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FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

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FYPO:0004604 - decreased chromatin silencing at subtelomere

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FYPO:0007883 - decreased cleavage-dependent termination of RNA polymerase II transcription

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FYPO:0007317 - decreased cytosolic translation

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FYPO:0003125 - decreased cytosolic translational initiation

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FYPO:0006231 - decreased cytosolic translational initiation during cellular response to osmotic stress

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FYPO:0006230 - decreased cytosolic translational initiation during cellular response to oxidative stress

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FYPO:0007223 - decreased establishment of chromatin silencing at centromere outer repeat region

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FYPO:0006549 - decreased gene expression

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FYPO:0006550 - decreased gene expression during nitrogen starvation

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FYPO:0007009 - decreased heterochromatin assembly by small RNA

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FYPO:0002056 - decreased mitochondrial translation

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FYPO:0003917 - decreased nonsense-mediated decay

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FYPO:0006809 - decreased nuclear-transcribed mRNA poly(A) tail shortening

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FYPO:0002522 - decreased poly(A)+ mRNA export from nucleus

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FYPO:0004009 - decreased rRNA transcription

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FYPO:0003598 - decreased snRNA 3'-end processing

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FYPO:0006613 - decreased termination of RNA polymerase II transcription

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FYPO:0002876 - decreased transcription

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FYPO:0002894 - decreased transcription during cellular response to calcium ion

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FYPO:0006676 - decreased transcription during cellular response to hydroxyurea

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FYPO:0003120 - decreased transcription during glucose starvation

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FYPO:0001852 - decreased transcription during iron starvation

References:

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FYPO:0006544 - decreased transcription during mitosis

References:

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FYPO:0005118 - decreased transcription during nitrogen starvation

References:

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FYPO:0000781 - decreased transcription during vegetative growth

References:

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FYPO:0004452 - decreased transcription from CDRE promoter in response to calcium ion

References:

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FYPO:0004480 - decreased transcription from CDRE promoter in response to micafungin

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FYPO:0004479 - decreased transcription from CDRE promoter in response to salt stress

References:

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FYPO:0005496 - decreased transcription from CRE promoter

References:

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FYPO:0005499 - decreased transcription from CRE promoter during cellular response to miconazole

References:

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FYPO:0005318 - decreased transcription from MCB promoter

References:

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FYPO:0005229 - decreased transcription from RNA polymerase II promoter during vegetative growth

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FYPO:0003251 - decreased transcription from SRE promoter

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FYPO:0007613 - decreased transcription from STREP promoter

References:

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FYPO:0006473 - decreased transcription of amino acid biosynthesis genes in response to amino acid starvation

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FYPO:0001798 - decreased translation

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FYPO:0003722 - decreased tRNA 5'-leader removal

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FYPO:0008394 - decreased tRNA splicing

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FYPO:0006355 - delayed onset of transcription during glucose starvation

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FYPO:0001555 - formation of abnormal tRNA processing intermediates

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FYPO:0002913 - increased antisense RNA transcription

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FYPO:0004540 - increased chromatin silencing

References:

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FYPO:0005071 - increased chromatin silencing at centromere

References:

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FYPO:0005315 - increased chromatin silencing at centromere central core

References:

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FYPO:0004541 - increased chromatin silencing at centromere inner repeat

References:

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FYPO:0006994 - increased chromatin silencing at centromere otr1L

References:

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FYPO:0006299 - increased chromatin silencing at centromere outer repeat

References:

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FYPO:0007599 - increased chromatin silencing at ectopic tethering site

References:

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FYPO:0006079 - increased chromatin silencing at rDNA

References:

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FYPO:0004376 - increased chromatin silencing at silent mating-type cassette

References:

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FYPO:0004542 - increased chromatin silencing at subtelomere

References:

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FYPO:0006520 - increased cytosolic translation

References:

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FYPO:0008413 - increased establishment of chromatin silencing at centromere outer repeat region

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FYPO:0006548 - increased gene expression

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FYPO:0000577 - increased gene silencing

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FYPO:0002914 - increased intergenic transcription

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FYPO:0007091 - increased negative regulation of transcription by zinc

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FYPO:0006070 - increased small RNA 3' adenylation

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FYPO:0008068 - increased spatial extent of chromatin silencing at silent mating-type cassette

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FYPO:0008130 - increased stop codon readthrough

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FYPO:0005917 - increased subtelomeric heterochromatin RNA level

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FYPO:0006614 - increased termination of RNA polymerase II transcription

References:

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FYPO:0002875 - increased transcription

References:

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FYPO:0007421 - increased transcription at telomere during G0

References:

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FYPO:0002908 - increased transcription at telomere during vegetative growth

References:

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FYPO:0002895 - increased transcription during cellular response to calcium ion

References:

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FYPO:0001854 - increased transcription during cellular response to iron

References:

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FYPO:0002878 - increased transcription during glucose starvation

References:

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FYPO:0005661 - increased transcription during nitrogen starvation

References:

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FYPO:0000780 - increased transcription during vegetative growth

References:

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FYPO:0001460 - increased transcription from CDRE promoter in response to calcium ion

References:

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FYPO:0005495 - increased transcription from CRE promoter

References:

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FYPO:0005498 - increased transcription from CRE promoter during cellular response to miconazole

References:

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FYPO:0005886 - increased transcription from HSE promoter

References:

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FYPO:0000239 - increased transcription from MCB promoter

References:

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FYPO:0007297 - increased transcription from SRE promoter

References:

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FYPO:0007612 - increased transcription from STREP promoter

References:

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FYPO:0007615 - increased transcription from STREP promoter during cellular response to nitric oxide

References:

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FYPO:0005662 - increased transcription from TR box

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FYPO:0004565 - increased transcription of pheromone response gene mRNA during vegetative growth

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FYPO:0003956 - UAA suppression

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FYPO:0003911 - UGA suppression

References:

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