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GO biological process ontology term - GO:0044281 - small molecule metabolic process

Term summary

ID
GO:0044281
Name
small molecule metabolic process
Ontology or CV name
GO biological process
Definition
The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule.

Parents

Annotation

GO biological process

GO:0044208 - 'de novo' AMP biosynthetic process

References:

Genes:

GO:0044210 - 'de novo' CTP biosynthetic process

References:

Genes:

GO:0006189 - 'de novo' IMP biosynthetic process

References:

Genes:

GO:0071266 - 'de novo' L-methionine biosynthetic process

References:

Genes:

GO:0036001 - 'de novo' pyridoxal 5'-phosphate biosynthetic process

References:

Genes:

GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process

References:

Genes:

GO:0044205 - 'de novo' UMP biosynthetic process

References:

Genes:

GO:0006083 - acetate metabolic process

References:

Genes:

GO:0006085 - acetyl-CoA biosynthetic process

References:

Genes:

GO:0006084 - acetyl-CoA metabolic process

References:

Genes:

GO:0006637 - acyl-CoA metabolic process

References:

Genes:

GO:0046084 - adenine biosynthetic process

References:

Genes:

GO:0006146 - adenine catabolic process

References:

Genes:

GO:0046083 - adenine metabolic process

References:

Genes:

GO:0006168 - adenine salvage

References:

Genes:

GO:1901911 - adenosine 5'-(hexahydrogen pentaphosphate) catabolic process

References:

Genes:

GO:0046086 - adenosine biosynthetic process

References:

Genes:

GO:0006154 - adenosine catabolic process

References:

Genes:

GO:0046085 - adenosine metabolic process

References:

Genes:

GO:0006169 - adenosine salvage

References:

Genes:

GO:0006172 - ADP biosynthetic process

References:

Genes:

GO:0019676 - ammonia assimilation cycle

References:

Genes:

GO:0046033 - AMP metabolic process

References:

Genes:

GO:0044209 - AMP salvage

References:

Genes:

GO:0019568 - arabinose catabolic process

References:

Genes:

GO:0009073 - aromatic amino acid biosynthetic process

References:

Genes:

GO:0009074 - aromatic amino acid catabolic process

References:

Genes:

GO:0009072 - aromatic amino acid metabolic process

References:

Genes:

GO:0046034 - ATP metabolic process

References:

Genes:

GO:0033499 - beta-D-galactose catabolic process via UDP-galactose, Leloir pathway

References:

Genes:

GO:0009102 - biotin biosynthetic process

References:

Genes:

GO:0006198 - cAMP catabolic process

References:

Genes:

GO:0046394 - carboxylic acid biosynthetic process

References:

Genes:

GO:0046705 - CDP biosynthetic process

References:

Genes:

GO:0046704 - CDP metabolic process

References:

Genes:

GO:0009423 - chorismate biosynthetic process

References:

Genes:

GO:0006101 - citrate metabolic process

References:

Genes:

GO:0009224 - CMP biosynthetic process

References:

Genes:

GO:0015937 - coenzyme A biosynthetic process

References:

Genes:

GO:0015938 - coenzyme A catabolic process

References:

Genes:

GO:0015936 - coenzyme A metabolic process

References:

Genes:

GO:0006241 - CTP biosynthetic process

References:

Genes:

GO:0046036 - CTP metabolic process

References:

Genes:

GO:0044211 - CTP salvage

References:

Genes:

GO:0006216 - cytidine catabolic process

References:

Genes:

GO:0019858 - cytosine metabolic process

References:

Genes:

GO:0030632 - D-alanine biosynthetic process

References:

Genes:

GO:0055130 - D-alanine catabolic process

References:

Genes:

GO:0019478 - D-amino acid catabolic process

References:

Genes:

GO:0019303 - D-ribose catabolic process

References:

Genes:

GO:0006014 - D-ribose metabolic process

References:

Genes:

GO:0036088 - D-serine catabolic process

References:

Genes:

GO:0006062 - D-sorbitol catabolic process

References:

Genes:

GO:0042843 - D-xylose catabolic process

References:

Genes:

GO:0042732 - D-xylose metabolic process

References:

Genes:

GO:0006240 - dCDP biosynthetic process

References:

Genes:

GO:0006217 - deoxycytidine catabolic process

References:

Genes:

GO:0006161 - deoxyguanosine catabolic process

References:

Genes:

GO:0006149 - deoxyinosine catabolic process

References:

Genes:

GO:0009159 - deoxyribonucleoside monophosphate catabolic process

References:

Genes:

GO:0009204 - deoxyribonucleoside triphosphate catabolic process

References:

Genes:

GO:1901909 - diadenosine hexaphosphate catabolic process

References:

Genes:

GO:1901907 - diadenosine pentaphosphate catabolic process

References:

Genes:

GO:0015959 - diadenosine polyphosphate metabolic process

References:

Genes:

GO:0015966 - diadenosine tetraphosphate biosynthetic process

References:

Genes:

GO:0015964 - diadenosine triphosphate catabolic process

References:

Genes:

GO:0006761 - dihydrofolate biosynthetic process

References:

Genes:

GO:0046452 - dihydrofolate metabolic process

References:

Genes:

GO:0071543 - diphosphoinositol polyphosphate metabolic process

References:

Genes:

GO:0035863 - dITP catabolic process

References:

Genes:

GO:0006233 - dTDP biosynthetic process

References:

Genes:

GO:0006231 - dTMP biosynthetic process

References:

Genes:

GO:0006235 - dTTP biosynthetic process

References:

Genes:

GO:0006227 - dUDP biosynthetic process

References:

Genes:

GO:0006226 - dUMP biosynthetic process

References:

Genes:

GO:0046081 - dUTP catabolic process

References:

Genes:

GO:0006696 - ergosterol biosynthetic process

References:

Genes:

GO:0008204 - ergosterol metabolic process

References:

Genes:

GO:0052699 - ergothioneine biosynthetic process

References:

Genes:

GO:0006747 - FAD biosynthetic process

References:

Genes:

GO:0001561 - fatty acid alpha-oxidation

References:

Genes:

GO:0033539 - fatty acid beta-oxidation using acyl-CoA dehydrogenase

References:

Genes:

GO:0006633 - fatty acid biosynthetic process

References:

Genes:

GO:0009062 - fatty acid catabolic process

References:

Genes:

GO:0030497 - fatty acid elongation

References:

Genes:

GO:0034625 - fatty acid elongation, monounsaturated fatty acid

References:

Genes:

GO:0019367 - fatty acid elongation, saturated fatty acid

References:

Genes:

GO:0006631 - fatty acid metabolic process

References:

Genes:

GO:0009398 - FMN biosynthetic process

References:

Genes:

GO:0046444 - FMN metabolic process

References:

Genes:

GO:0035999 - folate cycle

References:

Genes:

GO:0046656 - folic acid biosynthetic process

References:

Genes:

GO:0046655 - folic acid metabolic process

References:

Genes:

GO:0046294 - formaldehyde catabolic process

References:

Genes:

GO:0046370 - fructose biosynthetic process

References:

Genes:

GO:0006000 - fructose metabolic process

References:

Genes:

GO:0006106 - fumarate metabolic process

References:

Genes:

GO:0009450 - GABA catabolic process

References:

Genes:

GO:0009298 - GDP-mannose biosynthetic process

References:

Genes:

GO:0006094 - gluconeogenesis

References:

Genes:

GO:0006006 - glucose metabolic process

References:

Genes:

GO:0006536 - glutamate metabolic process

References:

Genes:

GO:0006114 - glycerol biosynthetic process

References:

Genes:

GO:0019563 - glycerol catabolic process

References:

Genes:

GO:0006071 - glycerol metabolic process

References:

Genes:

GO:0006127 - glycerol-3-phosphate shuttle

References:

Genes:

GO:0006545 - glycine biosynthetic process

References:

Genes:

GO:0019464 - glycine decarboxylation via glycine cleavage system

References:

Genes:

GO:0006096 - glycolysis

References:

Genes:

GO:0009436 - glyoxylate catabolic process

References:

Genes:

GO:0006177 - GMP biosynthetic process

References:

Genes:

GO:0046037 - GMP metabolic process

References:

Genes:

GO:0032263 - GMP salvage

References:

Genes:

GO:0006183 - GTP biosynthetic process

References:

Genes:

GO:0006147 - guanine catabolic process

References:

Genes:

GO:0046115 - guanosine catabolic process

References:

Genes:

GO:0050667 - homocysteine metabolic process

References:

Genes:

GO:0046100 - hypoxanthine metabolic process

References:

Genes:

GO:0043103 - hypoxanthine salvage

References:

Genes:

GO:0006188 - IMP biosynthetic process

References:

Genes:

GO:0046040 - IMP metabolic process

References:

Genes:

GO:0032264 - IMP salvage

References:

Genes:

GO:0006148 - inosine catabolic process

References:

Genes:

GO:0006190 - inosine salvage

References:

Genes:

GO:0032958 - inositol phosphate biosynthetic process

References:

Genes:

GO:0071545 - inositol phosphate catabolic process

References:

Genes:

GO:0043647 - inositol phosphate metabolic process

References:

Genes:

GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway

References:

Genes:

GO:0042852 - L-alanine biosynthetic process

References:

Genes:

GO:0042853 - L-alanine catabolic process

References:

Genes:

GO:0006526 - L-arginine biosynthetic process

References:

Genes:

GO:0006527 - L-arginine catabolic process

References:

Genes:

GO:0070981 - L-asparagine biosynthetic process

References:

Genes:

GO:0006530 - L-asparagine catabolic process

References:

Genes:

GO:0006532 - L-aspartate biosynthetic process

References:

Genes:

GO:0006533 - L-aspartate catabolic process

References:

Genes:

GO:0019240 - L-citrulline biosynthetic process

References:

Genes:

GO:0019344 - L-cysteine biosynthetic process

References:

Genes:

GO:0097054 - L-glutamate biosynthetic process

References:

Genes:

GO:0006538 - L-glutamate catabolic process

References:

Genes:

GO:1901704 - L-glutamine biosynthetic process

References:

Genes:

GO:0006541 - L-glutamine metabolic process

References:

Genes:

GO:0000105 - L-histidine biosynthetic process

References:

Genes:

GO:0071269 - L-homocysteine biosynthetic process

References:

Genes:

GO:0009090 - L-homoserine biosynthetic process

References:

Genes:

GO:1901705 - L-isoleucine biosynthetic process

References:

Genes:

GO:0006550 - L-isoleucine catabolic process

References:

Genes:

GO:0009098 - L-leucine biosynthetic process

References:

Genes:

GO:0006551 - L-leucine metabolic process

References:

Genes:

GO:0009085 - L-lysine biosynthetic process

References:

Genes:

GO:0071265 - L-methionine biosynthetic process

References:

Genes:

GO:0033353 - L-methionine cycle

References:

Genes:

GO:0006555 - L-methionine metabolic process

References:

Genes:

GO:0071267 - L-methionine salvage

References:

Genes:

GO:0006592 - L-ornithine biosynthetic process

References:

Genes:

GO:0009094 - L-phenylalanine biosynthetic process

References:

Genes:

GO:0055129 - L-proline biosynthetic process

References:

Genes:

GO:0006562 - L-proline catabolic process

References:

Genes:

GO:0006564 - L-serine biosynthetic process

References:

Genes:

GO:0006563 - L-serine metabolic process

References:

Genes:

GO:0009088 - L-threonine biosynthetic process

References:

Genes:

GO:0006567 - L-threonine catabolic process

References:

Genes:

GO:0000162 - L-tryptophan biosynthetic process

References:

Genes:

GO:0006571 - L-tyrosine biosynthetic process

References:

Genes:

GO:0009099 - L-valine biosynthetic process

References:

Genes:

GO:0006574 - L-valine catabolic process

References:

Genes:

GO:1903457 - lactate catabolic process

References:

Genes:

GO:0006089 - lactate metabolic process

References:

Genes:

GO:0042759 - long-chain fatty acid biosynthetic process

References:

Genes:

GO:0042758 - long-chain fatty acid catabolic process

References:

Genes:

GO:0001676 - long-chain fatty acid metabolic process

References:

Genes:

GO:0035338 - long-chain fatty-acyl-CoA biosynthetic process

References:

Genes:

GO:0035336 - long-chain fatty-acyl-CoA metabolic process

References:

Genes:

GO:0006108 - malate metabolic process

References:

Genes:

GO:0043490 - malate-aspartate shuttle

References:

Genes:

GO:2001295 - malonyl-CoA biosynthetic process

References:

Genes:

GO:0006013 - mannose metabolic process

References:

Genes:

GO:0051596 - methylglyoxal catabolic process

References:

Genes:

GO:0034355 - NAD+ biosynthetic process via the salvage pathway

References:

Genes:

GO:0019677 - NAD+ catabolic process

References:

Genes:

GO:0006741 - NADP+ biosynthetic process

References:

Genes:

GO:0006742 - NADP+ catabolic process

References:

Genes:

GO:0006740 - NADPH regeneration

References:

Genes:

GO:0010895 - negative regulation of ergosterol biosynthetic process

References:

Genes:

GO:0045717 - negative regulation of fatty acid biosynthetic process

References:

Genes:

GO:0045721 - negative regulation of gluconeogenesis

References:

Genes:

GO:0045820 - negative regulation of glycolysis

References:

Genes:

GO:2001211 - negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway

References:

Genes:

GO:0046496 - nicotinamide nucleotide metabolic process

References:

Genes:

GO:0071590 - nicotinamide riboside biosynthetic process

References:

Genes:

GO:0046495 - nicotinamide riboside metabolic process

References:

Genes:

GO:0019358 - nicotinate nucleotide salvage

References:

Genes:

GO:0071592 - nicotinic acid riboside biosynthetic process

References:

Genes:

GO:0055086 - nucleobase-containing small molecule metabolic process

References:

Genes:

GO:0009134 - nucleoside diphosphate catabolic process

References:

Genes:

GO:0009116 - nucleoside metabolic process

References:

Genes:

GO:0043174 - nucleoside salvage

References:

Genes:

GO:0009117 - nucleotide metabolic process

References:

Genes:

GO:0009225 - nucleotide-sugar metabolic process

References:

Genes:

GO:0006730 - one-carbon metabolic process

References:

Genes:

GO:0006591 - ornithine metabolic process

References:

Genes:

GO:0006107 - oxaloacetate metabolic process

References:

Genes:

GO:1900535 - palmitic acid biosynthetic process

References:

Genes:

GO:0015940 - pantothenate biosynthetic process

References:

Genes:

GO:0006098 - pentose-phosphate shunt

References:

Genes:

GO:0009052 - pentose-phosphate shunt, non-oxidative branch

References:

Genes:

GO:0009051 - pentose-phosphate shunt, oxidative branch

References:

Genes:

GO:0006799 - polyphosphate biosynthetic process

References:

Genes:

GO:0006798 - polyphosphate catabolic process

References:

Genes:

GO:0006797 - polyphosphate metabolic process

References:

Genes:

GO:0016094 - polyprenol biosynthetic process

References:

Genes:

GO:0070452 - positive regulation of ergosterol biosynthetic process

References:

Genes:

GO:0045722 - positive regulation of gluconeogenesis

References:

Genes:

GO:0045821 - positive regulation of glycolysis

References:

Genes:

GO:2001172 - positive regulation of glycolytic fermentation to ethanol

References:

Genes:

GO:1905857 - positive regulation of pentose-phosphate shunt

References:

Genes:

GO:0090180 - positive regulation of thiamine biosynthetic process

References:

Genes:

GO:1904775 - positive regulation of ubiquinone biosynthetic process

References:

Genes:

GO:0009249 - protein lipoylation

References:

Genes:

GO:0042776 - proton motive force-driven mitochondrial ATP synthesis

References:

Genes:

GO:0009113 - purine nucleobase biosynthetic process

References:

Genes:

GO:0006145 - purine nucleobase catabolic process

References:

Genes:

GO:0006144 - purine nucleobase metabolic process

References:

Genes:

GO:0043096 - purine nucleobase salvage

References:

Genes:

GO:0009146 - purine nucleoside triphosphate catabolic process

References:

Genes:

GO:0006164 - purine nucleotide biosynthetic process

References:

Genes:

GO:0006195 - purine nucleotide catabolic process

References:

Genes:

GO:0006166 - purine ribonucleoside salvage

References:

Genes:

GO:0009152 - purine ribonucleotide biosynthetic process

References:

Genes:

GO:0042823 - pyridoxal 5'-phosphate biosynthetic process

References:

Genes:

GO:0009443 - pyridoxal 5'-phosphate salvage

References:

Genes:

GO:0042821 - pyridoxal biosynthetic process

References:

Genes:

GO:0042818 - pyridoxamine metabolic process

References:

Genes:

GO:0008615 - pyridoxine biosynthetic process

References:

Genes:

GO:0008614 - pyridoxine metabolic process

References:

Genes:

GO:0006206 - pyrimidine nucleobase metabolic process

References:

Genes:

GO:0046135 - pyrimidine nucleoside catabolic process

References:

Genes:

GO:0006213 - pyrimidine nucleoside metabolic process

References:

Genes:

GO:0043097 - pyrimidine nucleoside salvage

References:

Genes:

GO:0046132 - pyrimidine ribonucleoside biosynthetic process

References:

Genes:

GO:0042867 - pyruvate catabolic process

References:

Genes:

GO:0006086 - pyruvate decarboxylation to acetyl-CoA

References:

Genes:

GO:0019660 - pyruvate fermentation

References:

Genes:

GO:0019654 - pyruvate fermentation to acetate

References:

Genes:

GO:0019655 - pyruvate fermentation to ethanol

References:

Genes:

GO:0006090 - pyruvate metabolic process

References:

Genes:

GO:0032443 - regulation of ergosterol biosynthetic process

References:

Genes:

GO:0006110 - regulation of glycolysis

References:

Genes:

GO:0009231 - riboflavin biosynthetic process

References:

Genes:

GO:0009191 - ribonucleoside diphosphate catabolic process

References:

Genes:

GO:0009156 - ribonucleoside monophosphate biosynthetic process

References:

Genes:

GO:0046512 - sphingosine biosynthetic process

References:

Genes:

GO:0006104 - succinyl-CoA metabolic process

References:

Genes:

GO:0000103 - sulfate assimilation

References:

Genes:

GO:0009228 - thiamine biosynthetic process

References:

Genes:

GO:0009229 - thiamine diphosphate biosynthetic process

References:

Genes:

GO:0006772 - thiamine metabolic process

References:

Genes:

GO:0036172 - thiamine salvage

References:

Genes:

GO:0019346 - transsulfuration

References:

Genes:

GO:0006744 - ubiquinone biosynthetic process

References:

Genes:

GO:0006225 - UDP biosynthetic process

References:

Genes:

GO:0006256 - UDP catabolic process

References:

Genes:

GO:0006011 - UDP-alpha-D-glucose metabolic process

References:

Genes:

GO:0052574 - UDP-galactose biosynthetic process

References:

Genes:

GO:0006048 - UDP-N-acetylglucosamine biosynthetic process

References:

Genes:

GO:0044206 - UMP salvage

References:

Genes:

GO:0006636 - unsaturated fatty acid biosynthetic process

References:

Genes:

GO:0006223 - uracil salvage

References:

Genes:

GO:0019628 - urate catabolic process

References:

Genes:

GO:0043419 - urea catabolic process

References:

Genes:

GO:0000050 - urea cycle

References:

Genes:

GO:0019627 - urea metabolic process

References:

Genes:

GO:0046109 - uridine biosynthetic process

References:

Genes:

GO:0006780 - uroporphyrinogen III biosynthetic process

References:

Genes:

GO:0006228 - UTP biosynthetic process

References:

Genes:

GO:0042761 - very long-chain fatty acid biosynthetic process

References:

Genes:

GO:0042820 - vitamin B6 catabolic process

References:

Genes:

GO:0042816 - vitamin B6 metabolic process

References:

Genes:

GO:0009115 - xanthine catabolic process

References:

Genes:

GO:0032265 - XMP salvage

References:

Genes:

GO:0005998 - xylulose catabolic process

References:

Genes: